Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1211
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0790 + 7216452-7216489,7216664-7216722,7217268-7218750,721...    31   1.1  
12_02_0304 + 17112677-17113195                                         30   1.8  
09_02_0348 - 7616686-7616802,7616888-7617176,7617259-7617429,761...    29   2.4  
09_02_0173 + 5323749-5324602,5324681-5324851,5324934-5325222,532...    29   3.2  
07_03_0528 + 19086835-19087363,19087514-19087539,19087753-190880...    29   4.2  
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591...    28   7.4  
02_05_0442 - 29044736-29046604                                         27   9.8  

>12_01_0790 +
           7216452-7216489,7216664-7216722,7217268-7218750,
           7218828-7218892,7219023-7219080,7219152-7219262,
           7219332-7219410,7219521-7219613,7219701-7219886
          Length = 723

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 525 SAAPDIAKPSESNLLTETKPEQPAAGPL--KQIFENSPVXQGIAGAVKKIQTTVNNPVKP 352
           S  P +A+P +S + +  +PE P A PL  K +  +S   +    +    +  V +P  P
Sbjct: 262 SHPPVVARPRDSPIASPPRPEPPVASPLGPKPLVASSRGPEPPVASPPVPEPPVASPPVP 321

Query: 351 RDSEVVEETKSDQEK 307
                   TK D E+
Sbjct: 322 EPPVASPRTKKDAEE 336


>12_02_0304 + 17112677-17113195
          Length = 172

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 528 ASAAPDIAKPSESNLLTETKPEQPAAGPLKQIFENSPVXQGIAGAVKKIQTTVNNPVK 355
           A + P +  PS+  ++  T+P  P+ G   Q    + +   + G +  + T +NNP K
Sbjct: 61  APSPPPVVAPSQPLVVAPTQPPTPSGG--SQCLRENVIALNVCGQL-DLSTLLNNPTK 115


>09_02_0348 -
           7616686-7616802,7616888-7617176,7617259-7617429,
           7617508-7617680,7617789-7618394,7618482-7618793,
           7619007-7619032,7619077-7619191
          Length = 602

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = -2

Query: 583 PGAQSTEKPAEATSTNGARECRSRHCETIGVKSTY*NKTRTTRSRAVKTNFREQPSXARH 404
           PG    ++PA A S   A++C   H ++  V+  Y       R+ A      E P   + 
Sbjct: 248 PGGHPPKRPASAPSAPAAQDC---HAQSYDVQLQYDTDFGEDRTEADSKAIHEPPPMKKS 304

Query: 403 RRSS*KDPNNSQ*SSEAKRFGSG 335
           R++       +    EAK  G G
Sbjct: 305 RKAHSSPQRITLDKPEAKGRGRG 327


>09_02_0173 +
           5323749-5324602,5324681-5324851,5324934-5325222,
           5325452-5325490
          Length = 450

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = -2

Query: 583 PGAQSTEKPAEATSTNGARECRSRHCETIGVKSTY*NKTRTTRSRAVKTNFREQPSXARH 404
           PG +  ++PA A S   A++C   H ++  V+  Y       R+ A      E P   + 
Sbjct: 86  PGGRPPKRPASAPSAPPAQDC---HAQSYDVQLQYDTDFGEDRTEADSKAIHEPPPMKKS 142

Query: 403 RRSS*KDPNNSQ*SSEAKRFGSG 335
           R++       +    EAK  G G
Sbjct: 143 RKAHSSPQRITLDKPEAKGRGRG 165


>07_03_0528 +
           19086835-19087363,19087514-19087539,19087753-19088064,
           19088152-19089038,19089370-19089658,19089744-19089782,
           19089888-19089926
          Length = 706

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = -2

Query: 583 PGAQSTEKPAEATSTNGARECRSRHCETIGVKSTY*NKTRTTRSRAVKTNFREQPSXARH 404
           PG++   +PA A ST  A++   RH ++  V+  Y       R+ A      E P   + 
Sbjct: 386 PGSRPPNRPASAPSTPPAQD---RHAQSYDVQLQYDTDFGEDRTEADSKAIYEPPPMKKS 442

Query: 403 RRSS*KDPNNSQ*SSEAKRFGSG 335
           R++       +    EAK  G G
Sbjct: 443 RKAHSSPQRITLDKPEAKGRGRG 465


>03_02_0146 +
           5916692-5917931,5918198-5918261,5918836-5919057,
           5919626-5919747,5920105-5920170,5920192-5920386,
           5920480-5921057,5921818-5921968,5922465-5922715
          Length = 962

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 519 APDIAKPSESNLLTETKPEQP-AAGPLKQIFE--NSPVXQGIAGAVKKIQTTVNNPVKP 352
           +P++   +E+     T    P   G +K+I     SP+     GAVKKI +   +P+ P
Sbjct: 120 SPNLTGKAENGHSLATSGISPNCPGAVKKIHSLATSPISPNWPGAVKKIHSLATSPISP 178


>02_05_0442 - 29044736-29046604
          Length = 622

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 472 KTRTTRSRAVKTNFREQPSXARHRR 398
           KT+TTR+    TN R  PS +R RR
Sbjct: 66  KTKTTRTVIATTNGRAAPSQSRPRR 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,545
Number of Sequences: 37544
Number of extensions: 190699
Number of successful extensions: 502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)