Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1211
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    28   5.0  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    28   5.0  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear recep...    28   6.6  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 217 GSRRNQGIXRRKTGRDKRERNNSRKQD*MSH 125
           G  R++   RR+T RD+R+  +SR++   SH
Sbjct: 43  GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 73


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 217 GSRRNQGIXRRKTGRDKRERNNSRKQD*MSH 125
           G  R++   RR+T RD+R+  +SR++   SH
Sbjct: 71  GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 101


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 217 GSRRNQGIXRRKTGRDKRERNNSRKQD*MSH 125
           G  R++   RR+T RD+R+  +SR++   SH
Sbjct: 129 GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 159


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 217 GSRRNQGIXRRKTGRDKRERNNSRKQD*MSH 125
           G  R++   RR+T RD+R+  +SR++   SH
Sbjct: 130 GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSH 160


>Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical
           protein F54D1.4 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 565 EKPAEATS--TNGARECRSRHCETIGVKSTY*NKTRTTRSRAVKTNFREQPSXARHRRSS 392
           EK  E T    N  R CR R C  +G+   Y    R  +S+  KT   ++ S +R     
Sbjct: 49  EKNCEVTKFERNACRYCRFRKCLLVGMNPDYVRPDR-EKSKKGKTVLSKKKSVSRSLSYR 107

Query: 391 *KDPNN 374
             DP++
Sbjct: 108 LADPSD 113


>AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear receptor
           NHR-7 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 565 EKPAEATS--TNGARECRSRHCETIGVKSTY*NKTRTTRSRAVKTNFREQPSXARHRRSS 392
           EK  E T    N  R CR R C  +G+   Y    R  +S+  KT   ++ S +R     
Sbjct: 49  EKNCEVTKFERNACRYCRFRKCLLVGMNPDYVRPDR-EKSKKGKTVLSKKKSVSRSLSYR 107

Query: 391 *KDPNN 374
             DP++
Sbjct: 108 LADPSD 113


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 229 RVESGSRRNQGIXRRKTGRDKRERNNSRKQD*MSH 125
           R     RR++   RR+   D+RER  SR +D   H
Sbjct: 439 RSRDRQRRSRSRDRRRYSPDRRERRRSRSRDRRRH 473


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 573 SLLRNPLKRLVRTEXASAAPDIAKPSESNLLTETKPEQPAAGPLK 439
           ++LR P     R + ASA    A P+     T+  P  PA  PL+
Sbjct: 211 AVLRIPSSASTRAKAASAVAPEANPAPVPTATKPSPFAPAIAPLR 255


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 573 SLLRNPLKRLVRTEXASAAPDIAKPSESNLLTETKPEQPAAGPLK 439
           ++LR P     R + ASA    A P+     T+  P  PA  PL+
Sbjct: 211 AVLRIPSSASTRAKAASAVAPEANPAPVPTATKPSPFAPAIAPLR 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,282,376
Number of Sequences: 27780
Number of extensions: 168457
Number of successful extensions: 552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)