Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1208
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    30   1.8  
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892...    29   3.2  
06_03_0015 + 15431648-15431796,15431878-15432061,15435370-154354...    29   4.2  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    28   7.4  

>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
            13676868-13677330,13677855-13678036,13678093-13678235,
            13678315-13678423,13679000-13679456,13680490-13682473,
            13682507-13682626,13682920-13682971
          Length = 1467

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 258  SIWNYKQKCVXESTTSSLIEIF*IHIKLTYSKKYIPVMLVWQNI 389
            S W  +++C+   T SSLIE+    +KL + +K +P  ++  +I
Sbjct: 935  SAWENRRQCLKAGTFSSLIELV---LKLWFERKTLPEYIIRHHI 975


>03_05_1014 -
           29687343-29687410,29688054-29688191,29689246-29689294,
           29689623-29689728,29690184-29690332,29690840-29690921,
           29691308-29691360,29691644-29691729,29691855-29691909,
           29692179-29692579,29693564-29693660,29694191-29694322,
           29694426-29694476,29694659-29694751,29694917-29694992,
           29695711-29695856,29696009-29696043,29696056-29696107,
           29696290-29696401,29696617-29696813,29697456-29697560,
           29697667-29697819,29698317-29698424,29698608-29698752,
           29699374-29699432,29701397-29701441,29701677-29701730,
           29701901-29702113,29702873-29702958,29704492-29704572,
           29704670-29704729,29705599-29705644,29706212-29706286,
           29706376-29706512,29708306-29708366,29708726-29708743,
           29709710-29709743,29709811-29709902,29709997-29710029
          Length = 1260

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 258 SIWNYKQKCVXESTTSSLIEIF*IHIK--LTYSKKYIPVMLVWQNIIS*ALKTDCIHFNF 431
           +I+N  ++ +    +S++ E+  I +   L      +PV L+W N+++  L    I FN 
Sbjct: 796 AIYNNTKQFIRYMISSNIGEVVCIFVAAVLGMPDTLVPVQLLWVNLVTDGLPATAIGFNK 855

Query: 432 IDEN 443
            D N
Sbjct: 856 PDSN 859


>06_03_0015 +
           15431648-15431796,15431878-15432061,15435370-15435455,
           15436863-15436957,15437614-15437689,15438073-15438185,
           15439849-15439955,15440227-15440400,15440691-15440915
          Length = 402

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 VFILWSIWNYKQKCVXESTTSSLIEI 320
           + + W+IW ++  CV    T S+ ++
Sbjct: 346 ILVTWAIWKHRNACVSNGVTPSMADV 371


>01_01_0517 +
           3803740-3806106,3806226-3806312,3806397-3807035,
           3807118-3807282,3807363-3807657,3807739-3807953,
           3808125-3808430,3808539-3808602,3808735-3808974,
           3809150-3809253
          Length = 1493

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -2

Query: 520 GLLILIDVINMHYETTQEKFRRNLIEFSSIKLKCMQSVLRAYDIIFCQ 377
           G  +++ + N+     QEKF++ L++   +++K    +LR   I+  Q
Sbjct: 455 GATVVVMLANVPPGQMQEKFQQKLMDCKDVRMKATSEILRNMRILKLQ 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,528
Number of Sequences: 37544
Number of extensions: 272889
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)