Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1208
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M67494-1|AAC13367.1|  174|Drosophila melanogaster myosin II prot...    43   3e-04
AY122159-1|AAM52671.1|  174|Drosophila melanogaster LD14743p pro...    43   3e-04
AE014298-853|AAF46132.1|  174|Drosophila melanogaster CG3595-PA ...    43   3e-04

>M67494-1|AAC13367.1|  174|Drosophila melanogaster myosin II
           protein.
          Length = 174

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -3

Query: 612 RDGLFDYVEFTRIXKPGXKDKDEQ 541
           ++GLFDY+EFTRI K G KDKDEQ
Sbjct: 151 KNGLFDYLEFTRILKHGAKDKDEQ 174


>AY122159-1|AAM52671.1|  174|Drosophila melanogaster LD14743p
           protein.
          Length = 174

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -3

Query: 612 RDGLFDYVEFTRIXKPGXKDKDEQ 541
           ++GLFDY+EFTRI K G KDKDEQ
Sbjct: 151 KNGLFDYLEFTRILKHGAKDKDEQ 174


>AE014298-853|AAF46132.1|  174|Drosophila melanogaster CG3595-PA
           protein.
          Length = 174

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -3

Query: 612 RDGLFDYVEFTRIXKPGXKDKDEQ 541
           ++GLFDY+EFTRI K G KDKDEQ
Sbjct: 151 KNGLFDYLEFTRILKHGAKDKDEQ 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,053,277
Number of Sequences: 53049
Number of extensions: 495048
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)