Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1208
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46793-3|CAA86772.1|  172|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z34801-8|CAA84331.1|  172|Caenorhabditis elegans Hypothetical pr...    38   0.006
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    29   2.2  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    29   2.2  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    29   2.2  
U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z46793-3|CAA86772.1|  172|Caenorhabditis elegans Hypothetical
           protein C56G7.1 protein.
          Length = 172

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -3

Query: 612 RDGLFDYVEFTRIXKPGXKDKDE 544
           + G FDYVEFTR+ K G KDKDE
Sbjct: 149 KGGQFDYVEFTRMLKHGTKDKDE 171


>Z34801-8|CAA84331.1|  172|Caenorhabditis elegans Hypothetical
           protein C56G7.1 protein.
          Length = 172

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -3

Query: 612 RDGLFDYVEFTRIXKPGXKDKDE 544
           + G FDYVEFTR+ K G KDKDE
Sbjct: 149 KGGQFDYVEFTRMLKHGTKDKDE 171


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/77 (22%), Positives = 33/77 (42%)
 Frame = +3

Query: 222 NMTYTHNVFILWSIWNYKQKCVXESTTSSLIEIF*IHIKLTYSKKYIPVMLVWQNIIS*A 401
           N  Y   + ++ S       C+  ST   ++ I      + Y++KY    +VW ++ +  
Sbjct: 318 NRWYDATIQLVVSSSGVNGLCIEHSTAEGIVIINMAETAIRYAQKYFKSKMVWNDVRNVH 377

Query: 402 LKTDCIHFNFIDENSIK 452
            K+   HF+    N +K
Sbjct: 378 PKSLTWHFSENSRNILK 394


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/77 (22%), Positives = 33/77 (42%)
 Frame = +3

Query: 222 NMTYTHNVFILWSIWNYKQKCVXESTTSSLIEIF*IHIKLTYSKKYIPVMLVWQNIIS*A 401
           N  Y   + ++ S       C+  ST   ++ I      + Y++KY    +VW ++ +  
Sbjct: 318 NRWYDATIQLVVSSSGVNGLCIEHSTAEGIVIINMAETAIRYAQKYFKSKMVWNDVRNVH 377

Query: 402 LKTDCIHFNFIDENSIK 452
            K+   HF+    N +K
Sbjct: 378 PKSLTWHFSENSRNILK 394


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/77 (22%), Positives = 33/77 (42%)
 Frame = +3

Query: 222 NMTYTHNVFILWSIWNYKQKCVXESTTSSLIEIF*IHIKLTYSKKYIPVMLVWQNIIS*A 401
           N  Y   + ++ S       C+  ST   ++ I      + Y++KY    +VW ++ +  
Sbjct: 318 NRWYDATIQLVVSSSGVNGLCIEHSTAEGIVIINMAETAIRYAQKYFKSKMVWNDVRNVH 377

Query: 402 LKTDCIHFNFIDENSIK 452
            K+   HF+    N +K
Sbjct: 378 PKSLTWHFSENSRNILK 394


>U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical
           protein K08B5.1 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 249 ILWSIWNYKQKCVXESTTSSLIEIF*IHIKLTYSKKYIPVMLV 377
           ILW I  Y+QK +  S     ++ + +H  ++ ++   PV++V
Sbjct: 209 ILWIINYYRQKIIGNSHLQVALDRYNLHENMSMTRLMAPVIIV 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,143,018
Number of Sequences: 27780
Number of extensions: 292476
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)