Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1207
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.3  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 116 REEKQNQAKEGFLHQETAGS 57
           RE+ ++  KEG+LH   +G+
Sbjct: 690 REQTESDDKEGYLHSVVSGA 709


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 416 GMRNIEATVNSTLHSSKD 469
           GM NIE  + +T +SSK+
Sbjct: 193 GMNNIETYIVNTNYSSKN 210


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 157 VKQKRWNKRKLTLAERKNRIKQKK 86
           + +  W+KR+ T  +RK   K++K
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRK 26


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 250 TADAIE-AIYKKAHEAIRADP 191
           T   IE A  KK H AIR +P
Sbjct: 619 TVQVIEDAAQKKKHRAIRPEP 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,434
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)