Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1206
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   3.8  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   6.6  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   8.7  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 167 LXNSFILIQQIDVSAEILDNVQTHLDPYDI 256
           + NS   I  IDV+ E L N Q HL PY +
Sbjct: 451 ISNSRNFIDCIDVTREFLKNGQLHLIPYTL 480


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 592 CQFGLKFFAFVKDRFAFMGLFKIARIF-CLDFYL 494
           C FGL FF ++   ++  G F    +F  L+FY+
Sbjct: 22  CVFGLGFFVWIIYGYSIGGFFAFLSLFHLLEFYI 55


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 308 TTQLCISMNSRVPNSLDRYH 249
           T+QLC++  SR PN++  +H
Sbjct: 21  TSQLCVAYLSRYPNNIGIHH 40


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 118 LIVTHYIYSLYTSTVYFIYFIIDF*ALLNCVYV 20
           LI T   +S   S V+++  ++D   L NC+YV
Sbjct: 186 LIQTSLHHSSDNSLVFYLEMLLDSLDLRNCIYV 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,568
Number of Sequences: 5004
Number of extensions: 44331
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)