Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1204
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    39   6e-04
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   3.4  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    26   4.5  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   6.0  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -3

Query: 476 SGEMVMFRCDTG-LSACVRTSGTEPKLKYYTELVCRADTVSEQEEMKSKLKQIVXEFINE 300
           S + V F  + G +   +RTSGTEPKLK+Y  +  R  ++ +  +  +++KQ +    +E
Sbjct: 521 SSDNVTFELENGEVIMTIRTSGTEPKLKFY--ICARGHSLEDSIKNATEVKQAIK---SE 575

Query: 299 LLQPEENG 276
              P++NG
Sbjct: 576 WFHPQQNG 583


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 480 HERRDGDVPLRHGAERVRAHQRD 412
           + +R GD+PLR+G  RV  H RD
Sbjct: 423 YHKRAGDIPLRYG-WRVERHIRD 444


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 407 PKLKYYTELVCRADTVSEQEEMKSKLKQIVXEFINELLQPE 285
           P+  Y TE    + T+ E   M   L   +  F+NE L+PE
Sbjct: 315 PEFSYATEYEPSSVTIVEWRAMTVVLLDKLLAFVNERLKPE 355


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 446 TGLSACVRTSGTEPKLKYYTELVCRADT 363
           TG  A VR+SGTE  ++ Y E   R ++
Sbjct: 503 TGGRAFVRSSGTEDAVRVYAEASSRGES 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,662
Number of Sequences: 5004
Number of extensions: 34627
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)