Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1204
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 31 0.88
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 30 1.5
11_04_0151 + 14135390-14135630,14135723-14136132 30 2.0
05_03_0177 - 9245131-9245793 30 2.0
06_01_1097 + 8996985-8997635 29 2.7
09_01_0019 + 403078-404211 29 3.5
08_02_1127 + 24496838-24497590 29 3.5
05_07_0359 - 29539294-29540832,29542366-29542518 29 3.5
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 3.5
05_02_0028 - 5764980-5766374 29 3.5
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 29 3.5
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 28 6.2
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 8.2
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 28 8.2
04_01_0363 + 4754650-4755912 28 8.2
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 546 APPAPRTDNTPTRVRHRAGPG 484
APPAPR+ TP R R AG G
Sbjct: 293 APPAPRSRRTPPRTRFSAGSG 313
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +2
Query: 404 WARSRWCARTRSAPCRSGTSPSRRSCSPGPARCLTRVGVLSVRGAGGAVTPAV 562
WA R A S TSP RSC P LT V + V GAG A++ +V
Sbjct: 63 WAPPRLAAAAASVGSSDPTSPIGRSCQWPPN--LTLVVIGDVHGAGEAMSGSV 113
>11_04_0151 + 14135390-14135630,14135723-14136132
Length = 216
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -2
Query: 534 PRTDNTPTRVRHRAGP-GLHERRDGDVPLRHGAERVRAHQRDRAQAQVLHRAGLPGRHCQ 358
PRT T R P L+ R+ G P A R AHQ A+VLH+ RH
Sbjct: 144 PRTTTTTPPPPSRTVPHALYHRQTGSAP--SCASRWAAHQMSSPPARVLHQQQHHNRHSG 201
Query: 357 RTR 349
R
Sbjct: 202 EAR 204
>05_03_0177 - 9245131-9245793
Length = 220
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 428 RTRSAPCRSGTSPSRRSCSPGPARCLTRVGVLSVRGAGGAVTP 556
R R R G +PS RS S G R R + S RG GGA P
Sbjct: 157 RRRRPRMRRGAAPSWRSVSRGCGRRRQRGTLPSSRGQGGAWKP 199
>06_01_1097 + 8996985-8997635
Length = 216
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 428 RTRSAPCRSGTSPSRRSCSPGPARCLTRVGVLSVRGAGGAVTP 556
R R R G +PS RS S G R R + S RG GGA P
Sbjct: 157 RRRRPRMRRGAAPSWRSVSRGCGRRRQRGTLPSRRGQGGAWKP 199
>09_01_0019 + 403078-404211
Length = 377
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 450 RHGAERVRAHQRDRAQAQVLHRAGLPGR--HCQRTRGNEIETKADRXRVHQ*APTARRER 277
R A+ R H RD + HR+ GR H + T+ ++ E + R +RR+R
Sbjct: 200 RERAKSGRKHSRDEEKKTSRHRSSSRGRSKHRRSTKRSDTEDDLEEERSKDKKKKSRRKR 259
Query: 276 XDR 268
+R
Sbjct: 260 HER 262
>08_02_1127 + 24496838-24497590
Length = 250
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 416 RWCARTRSA-PCRSGTSPSRRSCSPGPARCL 505
RW +RS PC SG++P R+ + ARC+
Sbjct: 155 RWSRPSRSRRPCSSGSAPGVRTATRALARCV 185
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 540 PAPRTDNTPTRVRHRAGPGLHERRDGDVPLRHGAERVRAHQRDRAQAQVL 391
P TP R+ + GPG + PLR GA+R R A A L
Sbjct: 198 PRKNAAATPLRLGVKRGPGRPRKNAAATPLRLGAKRGPGRPRKNATATPL 247
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 407 ARSRWCARTRSAPCRSGTSPSRRSCSPGP 493
+RSR AR R +P R + P+RR SP P
Sbjct: 224 SRSRSPARDRGSPPRRRSPPARRERSPAP 252
>05_02_0028 - 5764980-5766374
Length = 464
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +2
Query: 425 ARTRSAPCRSGTSPSRRSC----SPGPARCL---TRVGVLSVRGAGGAVTPAVKS 568
AR R+ PC+ GT+ RR C +P R L + G S RG GG A S
Sbjct: 213 ARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPRGCGGGGAGAAAS 267
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Frame = -2
Query: 654 RPRCKWRPWXRTFXSKGMSLGSQLQRLYTDFTAGVTAPPAPRTDNT---PTRVRHRAGPG 484
R R WR ++ +L +QL+R AG A TD+ VR +AG
Sbjct: 69 REREGWRARMERKEAEVRALWAQLERR----AAGCATATATATDDDGGGAAGVREKAGKD 124
Query: 483 LHERRDGDVPLRHGAERVRAHQRDRAQAQVLHRAGLPGRHCQRTRGNE 340
+RR DV + H R R+ + ++ LP +R E
Sbjct: 125 GEKRRRSDVAAPASRISGKKHARTRSFSSTATKSSLPDAGARRALSQE 172
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 417 AGAHARAQPRVAAEHHH 467
+GAHA A PR HHH
Sbjct: 16 SGAHAAAHPRTRTPHHH 32
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 320 RSALVSISFPLVR*QCRPGRPARCST*AWARSRWCARTRSAPCRSGTSPSRRSCSPGPAR 499
R+A+++ S V RP P+R S+ A + A +R P RS T R +P R
Sbjct: 95 RTAVLNTSISSV--SSRPTTPSRRSSTVVAPKQSIAASRPVPARSSTPVKTRPSTPTKTR 152
Query: 500 CLTRV 514
T V
Sbjct: 153 PSTPV 157
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -2
Query: 561 TAGVTAPPAPRTDNTPTRVRHRAGPGLHERRDGDVPLRHGAERVRAHQR 415
+AG PAP D RHR P RD D RHG H R
Sbjct: 68 SAGDAPAPAPLADK-----RHRPNPPSSGSRDRDRHHRHGHSHSHGHAR 111
>04_01_0363 + 4754650-4755912
Length = 420
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = -2
Query: 555 GVTAPPAPRTDNTPTRVRHRAGPGLHERRDGDVPLRHGAERVRAHQRDRAQAQVLHRAGL 376
G+ P P D T VR R G P + G VR H+R +A AQ G
Sbjct: 46 GIDGPDRPGADRT---VRRRPGSARLGTNPAGRPWQ-GRRHVRVHRRRQAAAQTAAADGA 101
Query: 375 P 373
P
Sbjct: 102 P 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,785,075
Number of Sequences: 37544
Number of extensions: 265259
Number of successful extensions: 1118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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