Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1204
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    26   0.99 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   4.0  
EF426186-1|ABO26429.1|  133|Anopheles gambiae unknown protein.         23   7.0  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      23   7.0  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   9.2  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   9.2  

>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 413 SRWCARTRSAPCRSGTSPSRRSCSPGPARCLTRVGVLSV 529
           +R  AR+ S  CRS  +   +  +P P   L RV V  +
Sbjct: 39  TRASARSASVDCRSSLASGSKLFAPEPRVALPRVSVTGI 77


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
 Frame = -3

Query: 647  GASGVPGVAXSXPRGCR*APSCSGXXXXXXXXXXXXXXXXXXTHLRVLGTGLDQDYTSGE 468
            GA G+PG      R C  AP  +G                   HL+ L  G    Y  G 
Sbjct: 779  GAPGLPGPKGEPGRDCEAAPYYTG-ILLVRHSQSDEVPVCEPGHLK-LWDGYSLLYVDGN 836

Query: 467  MVMFRCDTG-LSACVRTSGTEPKLKYYTELVC 375
                  D G   +CVR   T P L      VC
Sbjct: 837  DYPHNQDLGSAGSCVRKFSTLPILACGQNNVC 868


>EF426186-1|ABO26429.1|  133|Anopheles gambiae unknown protein.
          Length = 133

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 606 GMSLGSQLQRLYTDFTAGVTAPPAPRTDNTP 514
           G S+G+ L  L T +  G   P    T NTP
Sbjct: 39  GHSIGTSLGVLRTFYQLGARYPTLTHTCNTP 69


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 362 VSEQEEMKSKLKQIVXEFINELLQPEENGXI 270
           VS +  +  + KQ+V E+ +  + PE+ G +
Sbjct: 99  VSVEAVLDEETKQLVPEYSHGCMSPEQGGGL 129


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 609 KGMSLGSQLQRLYTDFTAGVTAPP 538
           +    G+QL  +YTDF A   + P
Sbjct: 601 RSFEAGTQLDAIYTDFHAAFDSLP 624


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 414 PAGAHARAQPRVAAEHHHLAARVVLV 491
           P   H +A   VAA HHHL     +V
Sbjct: 861 PPSTHHQAAA-VAAHHHHLQHHAAMV 885


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,963
Number of Sequences: 2352
Number of extensions: 10882
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)