Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1204
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    56   2e-08
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep...    27   9.8  
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue...    27   9.8  

>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -3

Query: 479 TSGEMVMFRCDTGLSACVRTSGTEPKLKYYTELV-CRADTVSEQEEMKSKLKQIVXEFIN 303
           TS EMV F   TG    +R SGTEPK+KYY EL+     T ++ E + S++ Q+  + + 
Sbjct: 522 TSSEMVTFFLKTGSVTTLRASGTEPKIKYYIELITAPGKTQNDLESVISEMDQLEKDVVA 581

Query: 302 ELLQPEENGXI 270
            LL+P++ G I
Sbjct: 582 TLLRPQQFGLI 592


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 425 ARTRSAPCRSGTSPSRRSCSPGPARC 502
           A+T   PC SGTS +  SCS G + C
Sbjct: 262 AKTFVIPCTSGTSGNSCSCSTGYSIC 287


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 414 PAGAHARAQPRVAAEHHHLA 473
           P+G  AR   R+A+EHHH++
Sbjct: 90  PSGLAARRLIRIASEHHHIS 109


>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
            homolog protein.
          Length = 1846

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 428  RTRSAPCRSGTSPSRRSCSPGPARCLTRVGVLSVRGAG 541
            R    P R  T  S  S + G   CLT  G  + RGAG
Sbjct: 1655 RENDVPTRRNTGASTSSYTGGGPYCLTNRGGSNERGAG 1692


>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
            formation protein 2 protein.
          Length = 1843

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 428  RTRSAPCRSGTSPSRRSCSPGPARCLTRVGVLSVRGAG 541
            R    P R  T  S  S + G   CLT  G  + RGAG
Sbjct: 1652 RENDVPTRRNTGASTSSYTGGGPYCLTNRGGSNERGAG 1689


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,739
Number of Sequences: 27780
Number of extensions: 215684
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)