Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1204
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = -2

Query: 618 FXSKGMSLGSQLQRLYTDFTAGVTAPPAPRTDNTPTRVRHRAGPG 484
           F    +S       LY +F      PP   TD+     R  AG G
Sbjct: 100 FPGNALSCKETFSLLYYEFDVATKEPPPWETDSYKLIGRIAAGEG 144


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 29  TLCIISPIISTDRSTPIMTILYN 97
           T+  + P +S DR++P+   LYN
Sbjct: 408 TIQTLRPQVSPDRTSPMEYRLYN 430


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 549 TAPPAPRTDNTPTRVRH 499
           T PP P+T   PT   H
Sbjct: 248 TKPPKPQTKTKPTSPYH 264


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 431 TRSAPC---RSGTSPSRRSCSPGPARCLTRVGVLSVRGAGGAVTPAVKSVXSRCSWEP 595
           T S+P    R  ++PS  + S  PA+     G  S R  G      +K + S  S  P
Sbjct: 507 TNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLP 564


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 360 QRTRGNEIETKADRXRVHQ*APTARRERXDRI 265
           +R R  ++ET  D   V   AP    +  DR+
Sbjct: 461 ERNRVYKVETIGDAYMVVSGAPVKENDHADRV 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,916
Number of Sequences: 438
Number of extensions: 2469
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)