Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1202
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0569 + 5056261-5057712                                           29   3.9  
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279...    29   3.9  
05_01_0574 + 5092209-5092963,5103988-5104654                           29   5.2  
05_01_0576 - 5130589-5131995                                           28   9.1  

>05_01_0569 + 5056261-5057712
          Length = 483

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 218 FFNYFRMSVASFDKILHNVRPYITFMDTKFRKCISPEERLSVTL 87
           F   FRM  A FDK+  ++   +  +DT  R  I   +R++V L
Sbjct: 144 FRRAFRMPRAVFDKLCDDLAAAVAKVDTTLRSAIPVPQRVAVCL 187


>03_06_0483 -
           34226496-34226864,34227140-34227360,34227677-34227933,
           34228388-34228483,34228660-34228805,34229774-34229977
          Length = 430

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 27  NKNTYKVQYICMCV*FYFLPQSHRQTLLW*NTFAKFCIHEGDVWTHVV 170
           N++  +  YI     F  L  S ++T+ W  TF    +HE + W+H+V
Sbjct: 151 NEDELRRFYIAANGDFSSLLSSVKKTIRWRETFHILTLHELEKWSHLV 198


>05_01_0574 + 5092209-5092963,5103988-5104654
          Length = 473

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 218 FFNYFRMSVASFDKILHNVRPYITFMDTKFRKCISPEERLSVTL 87
           F   FRM  A FDK+  ++   +T  DT  R  I   +R++V +
Sbjct: 140 FRRAFRMPRAVFDKLCDDLAAAVTKEDTTLRTAIPVPQRVTVCI 183


>05_01_0576 - 5130589-5131995
          Length = 468

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 221 KFFNYFRMSVASFDKILHNVRPYITFMDTKFRKCISPEERLSVTL 87
           +F   FRM  A FDK+  ++   +   DT  R  I   +R++V L
Sbjct: 130 EFRRAFRMPRAVFDKLCDDLAAAVAKEDTTLRAAIPVPQRVAVCL 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,117
Number of Sequences: 37544
Number of extensions: 292243
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)