Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1202
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.76 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.3  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = -2

Query: 299 IHPLTSRRFEKGFFQKKYKILREHPDKFFNYFRMSVASFDKILHNVRPYITFMDTKFRKC 120
           +H LTS + E   F+ K   ++++ D+ +        SF+      R +++ M   F   
Sbjct: 408 LHALTSGKCEHRPFEPKSTAVQKYQDQDYQPIYFVADSFEDAKEKFRRWVSTMSRPFEVR 467

Query: 119 ISP 111
             P
Sbjct: 468 YDP 470


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 645 IXHRLYSYCLVSRTVSLNS 589
           I HR+  YCL   TV+L S
Sbjct: 524 IGHRMPRYCLFGNTVNLTS 542


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 645 IXHRLYSYCLVSRTVSLNS 589
           I HR+  YCL   TV+L S
Sbjct: 524 IGHRMPRYCLFGNTVNLTS 542


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 496 VRPRP*HRKLNMKDNTSQINNVHEFYVHSK 585
           V+P   H+KL+ K    Q NN ++ Y +SK
Sbjct: 117 VQPPTKHQKLDQKFIFPQENNYNDNYFYSK 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,226
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)