Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1197
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   1.5  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    26   6.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   6.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   7.9  

>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 510 YSFLYRWIMKIGDVYQMEISVSDVEN 587
           ++ L  WI K GDV++ ++   D+EN
Sbjct: 459 HNLLNEWIKKQGDVFESKLLKEDIEN 484


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 576 DVENRSPIKIKILTKIXQEAFRIPCEHT 659
           D+EN+  I  KI  ++ Q+A    C HT
Sbjct: 702 DIENQENIVCKICDEVAQDAIESRCHHT 729


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 75  LN*KRKHTAQRNLFNLIPHEKSGWYSS 155
           +N  + H  Q N+F+ +PHE S + +S
Sbjct: 203 INRSKWHMKQSNIFSNVPHESSFYRNS 229


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 691  FKSLPXRSVLTVCSHGILNASWXIFVNILILIGDLFSTSLTLISIWYTSPIFMI 530
            F++ P   +L   S  +      I    +    +LF     L  I Y+SP+FMI
Sbjct: 993  FETTPTGRILNRFSSDVYRVDEVISRVFMFFFRNLFQIVFVLAVICYSSPMFMI 1046


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 257 FTFSELGLVICYTSSRK*ITHNRTFFVILNNFTSHKN 367
           FTF     +I Y ++     +N  F  + NNF+ +KN
Sbjct: 20  FTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKN 56


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 257 FTFSELGLVICYTSSRK*ITHNRTFFVILNNFTSHKN 367
           FTF     +I Y ++     +N  F  + NNF+ +KN
Sbjct: 20  FTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,906
Number of Sequences: 5004
Number of extensions: 53636
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)