Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1197
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0406 + 3607088-3607231,3608900-3608996,3609121-3609185,361...    30   2.0  
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122...    28   6.2  

>08_01_0406 +
           3607088-3607231,3608900-3608996,3609121-3609185,
           3610268-3610372,3610492-3610554,3610801-3610834,
           3610921-3611043,3611269-3611362,3611452-3611497,
           3611692-3611759,3611843-3611891,3612032-3612097,
           3612443-3612475
          Length = 328

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 622 IFVNILILIGDLFSTSLTLISIWYTSPIFM 533
           +FV +L LIG  F T  ++ISIW    ++M
Sbjct: 293 MFVGVLYLIGFTFFTLESIISIWVLERVYM 322


>07_01_0174 -
           1227871-1228043,1228303-1228423,1228519-1228588,
           1228877-1228953,1229215-1229393,1229558-1229684,
           1229849-1229861,1230351-1230378,1230426-1230516,
           1230870-1230956,1231239-1231276,1231426-1231464,
           1231553-1231699,1231899-1231958,1232033-1232111,
           1232429-1232517,1232906-1232967,1233238-1233427,
           1233929-1234068,1235813-1236147,1237086-1237133
          Length = 730

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 189 HGMALVLTQSPIILRYKFIKIKHLHFLSLVL*YAILQVESR 311
           HGM ++ + S    +  F K  HL + +L+L YA+L +ES+
Sbjct: 581 HGMEIIDSVSSC--KTTFSKNAHLAYSTLLLNYAVLSIESK 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,673
Number of Sequences: 37544
Number of extensions: 290232
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)