Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1197
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    32   0.34 
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    28   7.4  

>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
           protein protein 12 protein.
          Length = 862

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 228 LRYKFIKIKHLHFLSLVL*YAILQVESRLRTTVRSL*SSTILHLI-KTCINHANIVPVSD 404
           LR+    + + H L+++   A   V++RL  T  S  S+ +L+++ K CI   NI+ ++D
Sbjct: 770 LRFAEACLGNPHQLAVMQEIAATFVQARLDDTSSSTDSTNMLYMLWKECIGQKNIIAIAD 829

Query: 405 AHRLA 419
           A  LA
Sbjct: 830 ACLLA 834


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 300 VESRLRTTVRSL*SSTILHLI-KTCINHANIVPVSDA 407
           V++RL  T  S  S+ +L+++ K CI   NI+ ++DA
Sbjct: 764 VQARLDDTSSSTDSTNMLYMLWKECIGQKNIISIADA 800


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 556 WYTSPIFMIHLYKNEYQ*R*IIWTWWLKEMLEFHIF 449
           W+T+ I++ +    + +   + WTW+L   ++FHIF
Sbjct: 515 WWTNLIYLNNFLLQDQECC-MGWTWYLANDMQFHIF 549


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 556 WYTSPIFMIHLYKNEYQ*R*IIWTWWLKEMLEFHIF 449
           W+T+ I++ +    + +   + WTW+L   ++FHIF
Sbjct: 515 WWTNLIYLNNFLLQDQECC-MGWTWYLANDMQFHIF 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,901
Number of Sequences: 27780
Number of extensions: 295409
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)