Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1196
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    83   3e-17
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    40   3e-04
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   2.6  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    27   3.4  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   4.5  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   6.0  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
 Frame = -3

Query: 635 DIEDQPGPNVWGFKLPLGQLLAEFPNSPSGGGWVHSVSFSADGNKVAWVAHDSSINV--- 465
           D++ +P  +VWG +LP   + AE+P+    GGWVH+V FS  GN +A+  HDSS+ +   
Sbjct: 179 DVDAKPEASVWGSRLPFNTVCAEYPS----GGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234

Query: 464 -TDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLLYCXDGDDIKYVAKLD--- 297
                  RA+I +K   LP     W   ++++ AG++  P+L   +     +   LD   
Sbjct: 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGT 294

Query: 296 ---------NT-QRKESGGLXAMKKFQSLDRHARIETSD---TXLDSIHQNAXSCINIYK 156
                    NT + +E  G  +    +S  R+  ++ S    + L ++HQN  + +  Y 
Sbjct: 295 SKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA 354

Query: 155 GXKSXTNKFSTSG 117
           G       F++SG
Sbjct: 355 GTPGNITAFTSSG 367


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -3

Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVA 366
           V+  SFS DG  +A  + DSS+ + D   G+ +  L+        C+W T++ L+V+
Sbjct: 392 VNHASFSPDGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVS 448


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 614 PNVWGFKLPLGQLLAEFPNSPSGG 543
           PN  G    +  + A+FPNS +GG
Sbjct: 757 PNTQGINTEIKDMAAQFPNSQTGG 780


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 476 SINVTDAT--KGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIP 348
           SINV+ +T  K   VIK  T   P+L   ++ +N+ +++ HS  P
Sbjct: 47  SINVSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHSIQP 91


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSW 393
           V+++  S DG  +A  + D +I + D++ G  V  L+        CS+
Sbjct: 468 VNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSF 515


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 542 GWVHSVSFSADGNKVAWVAHDSSINVTDATKGR 444
           G V SV++S DG KVA  + D S  V D   G+
Sbjct: 75  GPVLSVNWSRDGTKVASGSVDKSAKVFDIQTGQ 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,371
Number of Sequences: 5004
Number of extensions: 52974
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)