Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1196
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 37 0.018
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 32 0.38
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 32 0.38
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 30 1.5
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 30 1.5
01_01_0765 + 5917163-5918212 30 1.5
06_03_0788 - 24603849-24603949,24604030-24604123,24604206-246044... 30 2.0
03_03_0256 + 15898702-15900420 30 2.0
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 2.7
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 29 2.7
05_03_0017 - 7392742-7393110,7393212-7393319,7393522-7394079,739... 29 2.7
03_05_0724 - 27147479-27147706,27147830-27147920,27148002-271480... 29 3.5
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551... 29 4.7
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 28 6.2
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 6.2
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 28 8.2
05_04_0278 - 19694590-19694757,19696331-19696391,19696503-196966... 28 8.2
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247... 28 8.2
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 28 8.2
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 28 8.2
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225... 28 8.2
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 28 8.2
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 542 GWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWIT 387
G ++++SFS DG +A + D + V D K + + K+ + L CSW T
Sbjct: 191 GAINAISFSPDGTYLATIGRDGYLRVFDFAKEQLIFGGKSYFGALLCCSWRT 242
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAG 363
V+ VSF DG+ A D+ V D GR L P LG S+ N L+ G
Sbjct: 359 VYGVSFHPDGSLAASCGLDAYARVWDLRSGRLWGTLMGHVKPVLGVSFSPNGYLVATG 416
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAG 363
V+ VSF DG+ A D+ V D GR L P LG S+ N L+ G
Sbjct: 359 VYGVSFHPDGSLAASCGLDAYARVWDLRSGRLWGTLMGHVKPVLGVSFSPNGYLVATG 416
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAG 363
V+ V FS DG +A + D S+ + + G+ V + SW ++ L+++G
Sbjct: 388 VNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWSADSRLLLSG 445
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAG 363
V+ V FS DG +A + D S+ + + G+ V + SW ++ L+++G
Sbjct: 337 VNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWSADSRLLLSG 394
>01_01_0765 + 5917163-5918212
Length = 349
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -3
Query: 695 AVXAAX-EXVDPPGCRNSARGDI---EDQPGPNVWGFKLPLGQLLAEFPNSPSGG 543
AV AA + PPG + ARGD+ +PG V + L + +L FP GG
Sbjct: 139 AVRAAFLDFFRPPGAADRARGDLLSMRQRPGEPVNRYYLRMQGILRRFPGRGGGG 193
>06_03_0788 -
24603849-24603949,24604030-24604123,24604206-24604413,
24604727-24604839,24605679-24605816,24605916-24605999,
24606517-24606675,24606754-24606837,24607505-24607840,
24607941-24608042,24608970-24609153,24609699-24610044,
24610444-24610591,24611053-24611203,24611786-24611867,
24612314-24612362
Length = 792
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 332 DGDDIKYVAKLDNTQRKESGGLXAMKKFQSLDRH 231
D D+K ++ + N +RK S G +M K S D+H
Sbjct: 726 DVKDVKLISTVVNKKRKSSNGTRSMDKNNSEDKH 759
>03_03_0256 + 15898702-15900420
Length = 572
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFL 405
V +SFS DG K +D +I D G+ + T +P++
Sbjct: 329 VRDISFSNDGTKFLSAGYDRNIQYWDTETGQVISTFSTGKVPYV 372
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 563 PNSPSGGGWVHSVSFSADGNKVAW 492
P SGGGW H DG +V W
Sbjct: 1772 PLDASGGGWWHGEMEGVDGEEVGW 1795
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 228 SMTIQGLELLHSXQSPGLLPLSVVEFGDV 314
S T Q LE++H PG+LP ++V DV
Sbjct: 203 SKTFQLLEMIHQSTKPGMLPNALVVANDV 231
>05_03_0017 -
7392742-7393110,7393212-7393319,7393522-7394079,
7394186-7394311,7394396-7394521,7394673-7395137,
7396822-7396901,7397394-7397664
Length = 700
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 361 WPATIRELLVIQLHPKNGRYSVFSFMTALPLVASVTLIELSWATQATLF 507
+P+ I E+ + L +NG Y V +++ + L + L+ +SWA+ + +
Sbjct: 443 FPSFIEEMKMFTLERQNGHYGVAAYIISNFLSSMPFLLAVSWASASITY 491
>03_05_0724 -
27147479-27147706,27147830-27147920,27148002-27148060,
27148197-27148312,27148389-27148472,27148677-27148824,
27148958-27149103,27149610-27149729,27149900-27149998,
27150787-27150828,27150915-27151017
Length = 411
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAG 363
V +V+FS+DGN +A + D INV + L+ F W LI+AG
Sbjct: 127 VCTVAFSSDGNLLASGSFDGRINVWNTATRTLQGTLEGSGSGFEWLKWHPRGHLIIAG 184
>02_04_0453 +
23053621-23054167,23054867-23054958,23055085-23055149,
23058558-23059086
Length = 410
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 500 VAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIP 348
V W+AH S +T R + +E++ +G S+ + V +CIP
Sbjct: 140 VGWLAHPHSRTITAGMARRPPLAPLSEWILLVGNSFRGSGKYCVCSSTCIP 190
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 373 IRELLVIQLHPKNGRYSVFSFMTALP-LVASVTLIELSWATQATLFPSAEKETLWTQPPP 549
I LLVI LH + G V S L + + L L + AT S +E + PP
Sbjct: 269 IGSLLVIHLHAQGGHVFVASICIVLAGMSIMMALPNLRYFIDATAAASRMQEMIEMLPPL 328
Query: 550 EG 555
EG
Sbjct: 329 EG 330
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 698 PAVXAAXEXVDPPGC-RNSARGDIE-DQPGPNVWGFKLPLGQLLAEFPNSPSGGG 540
PA PPG R+ +RG P P + G +L LG LL + SGGG
Sbjct: 36 PASAMGQAPSSPPGPGRSRSRGISRWPPPPPPLQGLRLDLGLLLGRKARTRSGGG 90
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 385 LVIQLHPKNGRYSVFSFMTALPLVASVTLIELSWATQATLFPSAEKETLWTQPPPEG 555
++IQ H +GR + T P + S+ +L + E+ T PP EG
Sbjct: 213 IIIQEHEYSGRIYMAMVSTYFPHILSIMFFQLEEVDGRVMVSYVERCVTQTLPPVEG 269
>05_04_0278 -
19694590-19694757,19696331-19696391,19696503-19696658,
19696740-19696912,19698199-19698276,19698399-19698575,
19698924-19699001,19700573-19700692,19700803-19701183
Length = 463
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 530 SVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEY-LPFLGCSWITNNSLIVA 366
S ++S + ++DSS+ + D G V KLK + L CSW + ++V+
Sbjct: 384 SPAYSTGQKYIYTGSYDSSVCIYDVVSGSQVAKLKGYHQLAIRDCSWHPFDPMLVS 439
>05_01_0316 +
2476689-2477030,2477164-2477283,2477742-2477819,
2477956-2478132,2478317-2478394,2478694-2478866,
2478994-2479149,2479573-2479633,2479831-2480049
Length = 467
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLK 426
+ SV FS DG ++ D SINV D + ++++
Sbjct: 200 IFSVKFSKDGQEIVVGNSDRSINVYDLRANKVSVRIR 236
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAGH 360
V V F A + + + D SI + DATK + + E+ F S +L+ AGH
Sbjct: 251 VSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILSAHPEMNLLAAGH 309
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 536 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAGH 360
V V F A + + + D SI + DATK + + E+ F S +L+ AGH
Sbjct: 251 VSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILSAHPEMNLLAAGH 309
>02_05_0420 +
28821717-28821854,28821944-28822210,28822299-28822568,
28822656-28823246,28823336-28823479
Length = 469
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -3
Query: 542 GWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAG 363
G + SVS++ DG VA + S I + D + R + L+ + +G S NN+++ G
Sbjct: 192 GPITSVSWAPDGQHVAVGLNSSDIQLWDTSSNRLLRTLRGVHESRVG-SLAWNNNILTTG 250
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 638 GDIEDQPGPNVWGFKLPLGQLLAEFPNSPSGGGWVHSVSFSADGNKVAW 492
GD ED P+ KL + L + S GGW H+++ +ADG W
Sbjct: 268 GDFEDHLVPH----KL---EALKDTTISQISGGWRHTMALAADGKLYGW 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,842,407
Number of Sequences: 37544
Number of extensions: 401662
Number of successful extensions: 1058
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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