Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1196
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical ...   134   4e-32
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    34   0.085
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    31   1.0  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    31   1.0  
AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical
           protein Y79H2A.6 protein.
          Length = 368

 Score =  134 bits (325), Expect = 4e-32
 Identities = 69/175 (39%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
 Frame = -3

Query: 635 DIEDQPGPNVWGFKLPLGQLLAEFPNSPSGGGWVHSVSFSADGNKVAWVAHDSSINVTDA 456
           +++++P PN WG K+P GQL++E+    S GGWVH V+FS  G ++A+V+HDSS++  D+
Sbjct: 181 EVDEKPSPNPWGQKMPFGQLMSEY----SVGGWVHRVAFSPSGCRLAFVSHDSSVSFVDS 236

Query: 455 T-KGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLLYCXDGDDIKYVAKLD-NTQRK 282
           T   + V  L T +LPF    WIT NS++ AGH C P+L+    D +K V KLD  +  K
Sbjct: 237 TVDSQKVQNLLTIHLPFTTVEWITENSVVTAGHDCSPVLFVVSQDVLKEVCKLDVPSAAK 296

Query: 281 ESGGLXAMKKFQSLDRHARIETSDTXLDSIHQNAXSCINIYKGXKSXTNKFSTSG 117
            S    A++ F+++DR+   E  +  L ++HQN  + I  + G      KF+T G
Sbjct: 297 SSTVNSALQLFKNIDRNNAAEKINVALKTLHQNRITQILPHSGTVGNVVKFTTCG 351


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 548 GGGWVHSVSFS-ADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLI 372
           G G +H  SFS +DG  +A V+HD  + + +      +  +K+ +   L  SW  +  LI
Sbjct: 303 GEGSIHQFSFSGSDGKMMATVSHDGFLRIFNYHAQELLAVMKSYFGGLLTLSWSPDAKLI 362

Query: 371 VAG 363
             G
Sbjct: 363 ATG 365


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = -3

Query: 599  FKLPLGQLLAEFPNSPSGGGWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTE 420
            F   +G    E   SP G G   +++    GNK+A    + ++ + DA  G+     +T 
Sbjct: 1225 FDSRVGGWTCELKVSP-GPGLTRAITVRDKGNKMAVALSNGTLAILDARNGKINALAQTN 1283

Query: 419  YLPFLGCSWITNNSLIV 369
                +  +W+++  L+V
Sbjct: 1284 STHTVSVNWLSDTRLLV 1300


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = -3

Query: 599  FKLPLGQLLAEFPNSPSGGGWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTE 420
            F   +G    E   SP G G   +++    GNK+A    + ++ + DA  G+     +T 
Sbjct: 1225 FDSRVGGWTCELKVSP-GPGLTRAITVRDKGNKMAVALSNGTLAILDARNGKINALAQTN 1283

Query: 419  YLPFLGCSWITNNSLIV 369
                +  +W+++  L+V
Sbjct: 1284 STHTVSVNWLSDTRLLV 1300


>AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical
           protein Y50D4A.4 protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -3

Query: 530 SVSFSADGNKVAWVAHDSSINVT--DATKGRAVIKLKTEYL---PFLGCSWITNNSLIVA 366
           +V FS DG   A     ++ +V   + T+    ++L        P L   W+TNN L++ 
Sbjct: 32  TVKFSPDGRLCAMQRTPTTADVVFLEKTETSLCLELTVNTKSKEPLLAVEWVTNNQLLLV 91

Query: 365 GHSCIPLLYCXDGDDIKYVAKLDN 294
            +    LLY  +      + K  N
Sbjct: 92  NNHSAELLYINEDKKSSKLLKATN 115


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 554 PSGGGWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLP 411
           P+    V +VSF+ DG+ +A  ++D  + + D   G+ +  L  +  P
Sbjct: 210 PAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENP 257


>Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.6 protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 517 EKETLWTQPPPEGELGNSANSCPKGNLKPHTFGPG*SSISPRAEFLQPGGST 672
           EKE+  T   PE +  N  N+   G  + +   P    +SP+AEFL  G  T
Sbjct: 109 EKESKKT---PEDDTYNIPNAPQNGEQQDYKPYPNNQDLSPKAEFLPEGQET 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,764
Number of Sequences: 27780
Number of extensions: 317790
Number of successful extensions: 809
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)