Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1195
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    27   2.0  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   7.9  

>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 668 IETSMKKIREEAKWSVENIPVIEKWLDDYVARYGVKDELL 549
           + +S + +RE+A W++ NI        D+V + GV + LL
Sbjct: 172 LSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLL 211


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -3

Query: 656 MKKIREEAKWSVENIPVIEKWLDDYVARYGVKDELLVQNK*YHKVYKFDGFLRFSNLLKC 477
           ++ IRE A    ENIP   KW +D   R   K  +  Q K Y    K  G +  SN  K 
Sbjct: 438 VRGIREYAP-GYENIPAFIKWPNDVYVRVD-KGGINFQGKQY---MKLSGIIVTSNYRKN 492

Query: 476 IIWFI 462
           ++  +
Sbjct: 493 VLHLV 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,788
Number of Sequences: 5004
Number of extensions: 43670
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)