Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1195
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    28   0.074
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    28   0.074
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.1  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   4.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 0.074
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 525 FVISFVLNQQFVFDSVSSYIVIEPFFYDRYVLDGPFGFFAYLLHGSLYGC 674
           FVI+  ++   +   +S  +VI   +Y+ +VL GP     Y + GSL+GC
Sbjct: 90  FVINLAISNFLMMFCMSPPMVIN-CYYETWVL-GPLFCQIYAMLGSLFGC 137


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 0.074
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 525 FVISFVLNQQFVFDSVSSYIVIEPFFYDRYVLDGPFGFFAYLLHGSLYGC 674
           FVI+  ++   +   +S  +VI   +Y+ +VL GP     Y + GSL+GC
Sbjct: 56  FVINLAISDFLMMFCMSPPMVIN-CYYETWVL-GPLFCQIYAMLGSLFGC 103


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 619 STDHLASSRIFFMEVSMDV 675
           STD+  S R++F E+S +V
Sbjct: 425 STDYDMSDRLYFEEISFEV 443


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 671 SIETSMKKIREEAKWSVENIP 609
           +++T MKK+RE+    +  IP
Sbjct: 43  TLQTHMKKVREQMAGILSRIP 63


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 642 AYLLHGSLYGCVRQ 683
           AYLL GSL G  RQ
Sbjct: 214 AYLLVGSLKGIARQ 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,056
Number of Sequences: 438
Number of extensions: 2482
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)