Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1194
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    29   0.85 
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   4.5  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    26   4.5  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   7.9  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   7.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 334 RYHLEQFLXALPMEHTVQNTEGTEVPPXTXRLQTI 438
           RY LEQ L   P+EH +  TE  + PP   R++T+
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPEN-RVKTL 118


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 210 IAGWYVAKKISGNA-LXMTAVAPGSMDELYSGGGRCDG 320
           I  +Y A  + G+  + M  +  GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 499 KLVFGSINSIRKPDVTAAAKGSSSLISYITHKY 597
           K  FGS+  I KP+ TA    +S  +  + H +
Sbjct: 83  KAKFGSVYPISKPEYTAEVTDASKEVFVVVHMF 115


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/59 (18%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 474 RAVRIVDNPILTDRLEPXGXR--RDFGSLCILYRMFHGECXEELFEMIPAXRFYHRTAR 304
           + V ++ N ++ +  +P   +  +DF ++ ++ R+++ +  + L  +IP     H   R
Sbjct: 165 KRVSVIPNALVAENFQPDPSKASKDFLTIVVISRLYYNKGIDLLIAVIPRICAQHPKVR 223


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 385 QNTEGTEVPPXTXRLQTIRENGIIDNPNGPPLYGVKWXKLVFGSINSIRKP 537
           QNT    +P  T  +++  E GI+D       Y   W +     IN +R P
Sbjct: 306 QNTSVFRIPEKTLDIKSPFEQGIVDTFKAN--YRRYWLQYSLNQINILRDP 354


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 487  VKWXKLVFGSINSIRKPDVTAAA----KGSSSLISYITHKYYSI 606
            + W + VF SIN +  P V+ A     K +++ +SY+   Y+ +
Sbjct: 2768 IAWRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHEL 2811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,631
Number of Sequences: 5004
Number of extensions: 57871
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)