Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1194
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    29   3.5  
08_01_0951 - 9436319-9436372,9436536-9436622,9436700-9436728,943...    29   4.7  

>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 452 IPFSRIVWSLWVCGGTSVPSVFCTVCSMGSAXRNC 348
           +PF  +   LW+CGG    + +C+  S  +  R+C
Sbjct: 1   MPFHMLASLLWLCGGI---AAYCSAASAATCVRSC 32


>08_01_0951 -
           9436319-9436372,9436536-9436622,9436700-9436728,
           9437447-9438044
          Length = 255

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 206 MSSPPRCF--LSAMTYPXSNEACGEY*AVGSGLALPLALLKSMGDGNHSPSGGPYXRLPT 33
           +S P +C   L  + Y    +A  EY  +G   AL    L+    G     GG Y R PT
Sbjct: 125 LSPPQKCTAALRMLAYGTPADALDEYLKIGKSTALEC--LEMFSQGVIEVFGGTYLRRPT 182

Query: 32  R 30
           R
Sbjct: 183 R 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,699,453
Number of Sequences: 37544
Number of extensions: 462706
Number of successful extensions: 931
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)