Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1193
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 177 ICLKQKENDYHII*RLSSXFKYLLTNLTNKLVNDL 281
           ICLK+KEN+          FK  +T   NK  NDL
Sbjct: 514 ICLKEKENEI--------DFKIEVTEDCNKSFNDL 540


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 438 YRKYPSHFEFYIVYIFNS 385
           Y K+P+ +E Y  Y F+S
Sbjct: 156 YMKFPAIYEIYPNYFFDS 173


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 438 YRKYPSHFEFYIVYIFNS 385
           Y K+P+ +E Y  Y F+S
Sbjct: 156 YMKFPAIYEIYPNYFFDS 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,182
Number of Sequences: 438
Number of extensions: 2777
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)