Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1192
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    30   0.31 
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    27   3.8  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.0  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   8.7  

>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 187 KQFMQCNRTYFSLRYLLSKYDYVFNQLSIIFHLLTFF 77
           +Q ++ NRT F L Y++ K+   FN LS I   +T +
Sbjct: 37  EQLLEKNRTDFKLMYVIVKFYRWFNNLSFITRWITIW 73


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 560 YFGDTFTHIMTIRIKSTPKALXSNPYYRGXAL 655
           Y GD F  ++  R+   P  +  NP Y G  L
Sbjct: 138 YLGDYFGFLLPERVSGFPFNVNDNPMYNGSTL 169


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 621 KALGVDFILIVIICVNVSPKYGSDTLINL 535
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 187 KQFMQCNRTYFSLRYLLSKYDYVFNQLSIIFHLLTFFI 74
           K  +QC   YF+L +L++ + +  + +S++  L  FFI
Sbjct: 183 KADIQC---YFALSWLITWFAHDVSDISVVCRLFDFFI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,816
Number of Sequences: 5004
Number of extensions: 54530
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)