Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1190
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    27   3.8  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   6.6  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   8.7  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.7  

>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 573 HSKLTIERDCTRNETVR--V*SMSDERE 650
           HSK  + R+C RNE+V+  +  MSD  E
Sbjct: 91  HSKSVLPRECVRNESVKPIIDFMSDHVE 118


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 458 NRGNRLRRTHYDYKPR 411
           NRGN+  R H  YKP+
Sbjct: 156 NRGNKYSRKHITYKPK 171


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 500 RPHYGFFPGAVNRYNRGNRLRR 435
           +PH   FPG   R++R + L R
Sbjct: 52  KPHVCTFPGCAKRFSRSDELTR 73


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 473 AVNRYNRGNRLRRTHYDYKPRKPLVIFTV*RWISKEQYVLLLW 345
           +V+ Y  GN L     +YKP KP+    +  +   E+ V  LW
Sbjct: 160 SVSIYETGNTLLSQKEEYKPEKPIYGDYMPSFEVDEEKVQKLW 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,489
Number of Sequences: 5004
Number of extensions: 55578
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)