Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1190
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2223|AAF58039.1|  714|Drosophila melanogaster CG3666-PA...    31   1.3  
BT001887-1|AAN71661.1|  664|Drosophila melanogaster SD14914p pro...    29   6.8  
AE014297-1929|AAF55125.1|  662|Drosophila melanogaster CG6966-PA...    29   6.8  

>AE013599-2223|AAF58039.1|  714|Drosophila melanogaster CG3666-PA
           protein.
          Length = 714

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 197 ECQWPASIKFCTTCV--HTSPSWIQNFANVF 111
           EC  P SI FCTT +  H   SW+Q  + V+
Sbjct: 363 ECNPPRSIVFCTTSIIQHIKCSWLQEASQVY 393


>BT001887-1|AAN71661.1|  664|Drosophila melanogaster SD14914p
           protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 199 SNVSGQLR*NFAQ-RASIHHLHGYKISQMYFTRGASVCDFEVRNKITHTCIYIVLYR 32
           +NV+   R N    RA+    H Y+I +     GA   DFEV N+  HTC+ I  Y+
Sbjct: 107 ANVNSTTRTNSTPLRAACFDGH-YEIVKYLVHHGA---DFEVANRHGHTCLMIACYK 159


>AE014297-1929|AAF55125.1|  662|Drosophila melanogaster CG6966-PA
           protein.
          Length = 662

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 199 SNVSGQLR*NFAQ-RASIHHLHGYKISQMYFTRGASVCDFEVRNKITHTCIYIVLYR 32
           +NV+   R N    RA+    H Y+I +     GA   DFEV N+  HTC+ I  Y+
Sbjct: 105 ANVNSTTRTNSTPLRAACFDGH-YEIVKYLVHHGA---DFEVANRHGHTCLMIACYK 157


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,249,545
Number of Sequences: 53049
Number of extensions: 544701
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)