Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1188
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    29   0.54 
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   8.7  

>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 570 INSNSVNRLVTFFCNFME*H-ILNXKVVLPRPLIYWVGXVYLLGITHT 710
           +N + +  + +FF   ++ H ++N    +   LI+W   VYLLG+  T
Sbjct: 32  VNGDVLLEIPSFFIESLQFHYLINQSEKISLKLIFWNELVYLLGLNDT 79


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 352 IFFILMNIILR-I*XALPRPLIVYWVIYCDYTIIFLFNFYFHVYHIGLTDKLXFILIRLR 528
           IF  L +++ + +    P P  + + I   Y  I     +  +++I  TDK   + I + 
Sbjct: 106 IFSFLYSLLFKNLDYIQPGPTFLIFAILYQYYYIVPSTVFVRLFNIKFTDKFQMV-IPMI 164

Query: 529 GSPLSXFLKYLLNALI 576
           G   S F    +NA +
Sbjct: 165 GLAFSHFPSTFINAFL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,565
Number of Sequences: 5004
Number of extensions: 44855
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)