Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1186
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    29   2.2  
Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 530 LRKCTKLLQKHLPNA*RKEKKKLTWSRAR*CL-VACG 637
           LR C + ++KHL +   K+K +L W R   C  + CG
Sbjct: 370 LRFCIEKVRKHLEDLDSKDKNELIWQRFFSCADIICG 406


>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 640 LTASNQTSSSARPRQLFFFFSLRIWQVFL*QFCTLP*CVFLIIIIYRRFMCKINN 476
           LT   +   S   R+LFF FS  +W  F    C LP  +  +  I+    C+INN
Sbjct: 199 LTHMEERQRSKLFRRLFFLFSSTLWTFFT---C-LPYRLLYLFSIFCGETCQINN 249


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 640 LTASNQTSSSARPRQLFFFFSLRIWQVFL*QFCTLP*CVFLIIIIYRRFMCKINN 476
           LT   +   S   R+LFF FS  +W  F    C LP  +  +  I+    C+INN
Sbjct: 199 LTHMEERQRSKLFRRLFFLFSSTLWTFFT---C-LPYRLLYLFSIFCGETCQINN 249


>U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical
           protein R03H4.1 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = +3

Query: 303 IARYPHYN----NGFLXY-IKNDKDIENLHLNR 386
           +  +P YN    N FL Y I+N  ++E+LHLNR
Sbjct: 531 LGSHPLYNINHLNTFLHYLIQNSDELESLHLNR 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,179,891
Number of Sequences: 27780
Number of extensions: 212969
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)