Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1185
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    29   3.8  
03_02_1007 + 13160772-13161311                                         28   5.0  
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351...    28   6.6  
12_02_1147 - 26459481-26460124,26460241-26460382,26461658-264616...    27   8.7  
01_06_0754 + 31721356-31721783,31721914-31722004,31722276-317223...    27   8.7  

>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 469 GNAGLPPSTGDGGWGMSDS 525
           G+A  PPS+GDGG G + S
Sbjct: 889 GSASTPPSSGDGGAGQASS 907


>03_02_1007 + 13160772-13161311
          Length = 179

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 512 PHPPSPVEGGSPAFPPDI 459
           P PPSPV+  +PA PP +
Sbjct: 9   PAPPSPVQAPAPAAPPPV 26


>07_03_0474 +
           18534071-18534238,18534349-18534445,18534992-18535122,
           18535191-18535286,18535459-18535464,18535521-18535688,
           18535892-18536020,18536613-18536673,18536928-18537031,
           18537137-18537220,18538433-18538461,18538506-18538617,
           18539200-18539313,18539767-18539832,18540237-18540309,
           18540396-18540482,18540710-18540764,18540869-18540940,
           18541039-18541101,18541177-18541294,18541377-18541451
          Length = 635

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 405 HHLIGFCCAFITLSCFFFYVRRKRRTPTLHWGWRVGHVGFXPTK 536
           HHL+     F+T  C    V  KR +  LH  W     GF  T+
Sbjct: 21  HHLLLLARGFVTAECHRPVVLHKRGSDILHDPWFNRGTGFSMTE 64


>12_02_1147 -
           26459481-26460124,26460241-26460382,26461658-26461699,
           26463377-26463502
          Length = 317

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 484 PPSTGDGGWGMSDSNRLKPPVAQQPTSNP 570
           PP+  +GG    D+   +P  A  P SNP
Sbjct: 233 PPAPSEGGEKKEDAKPAEPEAAAAPPSNP 261


>01_06_0754 +
           31721356-31721783,31721914-31722004,31722276-31722365,
           31722952-31723078,31723237-31723280,31723749-31724009
          Length = 346

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 578 FVRGLDVGC*ATGGFSRXESDMPHPPSPVEGGSPA 474
           FV     GC A G F R + D      P EGGS A
Sbjct: 55  FVEVAPAGCGAGGEFDRLDDDQLMSMFPDEGGSSA 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,304
Number of Sequences: 37544
Number of extensions: 359043
Number of successful extensions: 1015
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)