Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1185
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    30   0.066
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    26   1.1  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    23   10.0 
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    23   10.0 

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 29.9 bits (64), Expect = 0.066
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 545 TGGFSRXESDMPHPPSPVEGGSPAFPP 465
           +GG        P PP P++GG+P  PP
Sbjct: 287 SGGMPSGMVGPPRPPMPMQGGAPGGPP 313


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 484 PPSTGDGGWGMSDSNRLKPPVAQQPTSNPR 573
           PP+ GD    M  S   K P+A  PT   R
Sbjct: 192 PPTPGDDSDSMGASRHGKTPLATPPTKEKR 221


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -3

Query: 424 QKPIR*WCISVRTYNTLCLQRSQLEQMFSICMYIACY 314
           Q  IR  C   + +  LC    + E    + M +AC+
Sbjct: 379 QAHIRRHCAFAKQFEALCRADDRFEIFGEVAMGLACF 415


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -3

Query: 424 QKPIR*WCISVRTYNTLCLQRSQLEQMFSICMYIACY 314
           Q  IR  C   + +  LC    + E    + M +AC+
Sbjct: 410 QAHIRRHCAFAKQFEALCRADDRFEIFGEVAMGLACF 446


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,634
Number of Sequences: 2352
Number of extensions: 13786
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)