Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1185
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   2.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.2  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   9.2  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 310 KNNMQCTCILKTFALID 360
           K  + C CILK F ++D
Sbjct: 58  KVQLYCECILKNFNILD 74


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 44  NKCLYFSEKKKKKK 3
           N CL F E+K++KK
Sbjct: 115 NVCLKFEEQKRRKK 128


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 506 PPSPVEGGSPAFPP 465
           PP+P +G  P  PP
Sbjct: 39  PPNPSQGPPPGGPP 52


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 22  SEKYRHLLNKSNISPYHKIRXNYVIN 99
           +  Y +  N +  + Y K+  NY+IN
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 22  SEKYRHLLNKSNISPYHKIRXNYVIN 99
           +  Y +  N +  + Y K+  NY+IN
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYIIN 123


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 380 YXXPSEKSIRANVFNMHVHCM 318
           Y   +++ IRA +  + VHCM
Sbjct: 70  YLSGTDRVIRAKLGKVGVHCM 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,357
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)