Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1183
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   9.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.5  

>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 512 IASLEQ-VPWRXXXXXXXXXXXXXXKSSHHAIAKERWR 622
           I SL+  VPW                S+HHA+ + RWR
Sbjct: 68  IGSLQPLVPWLIRQKWHKIDEPRQLPSTHHALPEGRWR 105


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 19  AYEKTYDIYFNYLHHKCSQLY 81
           AYE  +D  F+ L H+ S++Y
Sbjct: 798 AYESNFDGLFDSLEHEASEVY 818


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 19  AYEKTYDIYFNYLHHKCSQLYSFIHKVKTLSNP 117
           AY+    I  +YL  +C  L + I+++   +NP
Sbjct: 842 AYQALEQIRVHYLIRRCEALTNIINRISFRNNP 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,572
Number of Sequences: 5004
Number of extensions: 40764
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)