Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1183
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    31   0.94 
Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   8.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   8.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   8.7  

>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 19  AYEKTYDIYFNYLHHKCSQLYSFIHKVKTL-SNPFTHLQLSLHYF 150
           A++ TY  +F+Y++HK   LY + H V  + S+PF      LH F
Sbjct: 140 AFDFTY-FWFHYINHKVKWLYRWCHSVHHMYSSPFAASAQHLHPF 183


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -3

Query: 564 TMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEE 463
           T+ VHG I+H  C+SDA +  ++   +N +D+++
Sbjct: 785 TVNVHGKIVHSACASDAARSLDNSSFFNDSDIKK 818


>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 34  YDIYFNYLHHKCSQLYSFIHKVKTLSNPFTHLQLSLHY 147
           +D+YFN +   CS L+S +     L++   +L +S +Y
Sbjct: 271 FDMYFNLILAYCSNLFSALFCANALAHFLINLSMSRNY 308


>AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical
           protein Y37H9A.6 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 519 DAIQLEEHHEGWNWADLEE 463
           D +QL   H+ W W +LE+
Sbjct: 96  DDVQLSHEHQNWKWCELED 114


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 483 NWADLEELAVTSFL-RPYAA-NPCHPCLIYLHCGAEW 379
           N  +L  +  T+ + RPY A NP  PC++  HC   +
Sbjct: 527 NEPELHRIVTTAMMHRPYGAQNPHSPCMVDGHCSKRY 563


>AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical
           protein T15B7.8 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 94  KVKTLSNPFTHLQLSLHYF*NVPKVQPKYQMSFSTTILSY 213
           K KT++  F  L + L Y  NVPK  PK+     T +L Y
Sbjct: 232 KTKTITTSFQPLSI-LWYGSNVPKGVPKHTNGNETLVLCY 270


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 456 PRAPLDPPNSSPRDAPPTG 512
           PRA   PP   PR +PPTG
Sbjct: 292 PRAGSPPPPPPPRGSPPTG 310


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 456 PRAPLDPPNSSPRDAPPTG 512
           PRA   PP   PR +PPTG
Sbjct: 313 PRAGSPPPPPPPRGSPPTG 331


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 456 PRAPLDPPNSSPRDAPPTG 512
           PRA   PP   PR +PPTG
Sbjct: 298 PRAGSPPPPPPPRGSPPTG 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,927
Number of Sequences: 27780
Number of extensions: 239002
Number of successful extensions: 830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)