Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1182
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 45 9e-06
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 34 0.017
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 33 0.052
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 32 0.091
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 30 0.37
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 28 1.5
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.5
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 27 2.6
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 6.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 6.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 6.0
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 6.0
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.9
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 45.2 bits (102), Expect = 9e-06
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = -1
Query: 613 SQFDTDNSGSISLDEFLIKIRPPMSES-RRNIVEQAFKKLDKTGXGAITIDDIKGVYSVD 437
++ D D +G+I EFL + M ++ V +AFK DK G G IT++++ V +
Sbjct: 55 NEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHV--LT 112
Query: 436 SQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYS 308
S S EE D+I E+D DG + EEF S
Sbjct: 113 SLGERLSQEEVADMIR-------EADTDGDGVINYEEFSRVIS 148
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 34.3 bits (75), Expect = 0.017
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Frame = -1
Query: 607 FDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDD----IKGVYS- 443
FD D +G I EF+ + + + AF+ D G I+ D+ + +Y
Sbjct: 72 FDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKM 131
Query: 442 VDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEF 323
V S + E+T + + + D DG++TLEEF
Sbjct: 132 VGSMVKLPEDEDTPEKRVNKIFNMM--DKNKDGQLTLEEF 169
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 32.7 bits (71), Expect = 0.052
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = -1
Query: 613 SQFDTDNSGSISLDEFLIKIRP-PMSESRRNIVEQAFKKLDKTGXGAITIDDIKGVYSVD 437
S D D G + EF+ + + ++ ++ AFK D G I+ ++ V +
Sbjct: 63 SVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMM 122
Query: 436 SQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGISVS 293
T + ++ + ++ K + E D DGK++ EEF + SG +V+
Sbjct: 123 VGTNLRE-DQLQQIVDKTIM---EVDKDRDGKISFEEFKDIVSGSNVT 166
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 31.9 bits (69), Expect = 0.091
Identities = 26/108 (24%), Positives = 48/108 (44%)
Frame = -1
Query: 607 FDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDDIKGVYSVDSQT 428
FD+D +I E +R + ++ V + + DKTG G + ++D V +
Sbjct: 46 FDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVE 105
Query: 427 RYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGISVSIDN 284
R + E++ KR F+ D T GK++L ++ +ID+
Sbjct: 106 R----DPLEEI--KRAFELFDDDET--GKISLRNLRRVAKELNENIDD 145
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 29.9 bits (64), Expect = 0.37
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 2 FFFFFFLTHIKAFHLLI 52
FFFFFF +H + FH+ I
Sbjct: 79 FFFFFFFSHCRRFHIAI 95
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 442 VDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKV 338
VD T + E ED+I++ L NF T++G +
Sbjct: 55 VDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSI 89
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 481 GAITIDDIKGVYSVDSQTRYKSGEETEDV 395
G I+I D GVYS + T YKS E+ E +
Sbjct: 126 GVISIHDSTGVYSQITTTPYKSLEDYEQL 154
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 463 DIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDG 356
D+ G+ S DS +++ G +DV+ + F NFE+ G
Sbjct: 70 DMYGMNS-DSNSQFDGGVNLDDVLAQMFGMNFEAGG 104
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Frame = -1
Query: 598 DNSGSISLDEFLIKIRPPMSESRRNIVEQAFKK--------LDKTGXGAITIDDIKGVYS 443
++ G +S+D FL K++ + + + F+K DK DD+
Sbjct: 853 NSKGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYKYLKIKDKKSKDVDPDDDLVNQLP 912
Query: 442 VDSQT--RYKSGEETEDVIMKRFL 377
+++ T RYKS T I +R L
Sbjct: 913 LNAYTKPRYKSAASTRLNIYQRIL 936
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 269 PNDASGVQAXKLDSKLYLSRSNTHIHAPRAKKTEK*MHAC 150
PN ++ +++YL S TH +PR+ T K + C
Sbjct: 1225 PNGTKLLEYQLDQTEVYLDLSGTHAASPRSSMTVKPLSLC 1264
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 329 FKSNLPIDCSIGLKIREEPLHYYIFSFF 412
++S+ P S+G E L YYI+ +F
Sbjct: 19 YESSAPASSSLGNSHPNESLDYYIYDYF 46
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 156 RLYFPN*KFISFLFVMSKLLNLI*SYFIVVKFISFI 49
R YF FIS +F +K++N + +VV + F+
Sbjct: 441 RPYFSLGSFISLIFSFTKVVNSLWLVLLVVPLLGFV 476
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 407 FFAALISGLRIDRVNTFNVINXDCTXTSLVKLLECLFYNVTT 532
FF A+ S ++ +N+ N +CT S+ +++ YNV++
Sbjct: 577 FFHAIQSHFHLEGPIRYNM-NSNCTPNSIASIIQKKSYNVSS 617
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,598
Number of Sequences: 5004
Number of extensions: 46195
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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