Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1182
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical pr... 46 3e-05
L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calciu... 46 3e-05
Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C pr... 44 1e-04
U40427-2|AAA81468.2| 159|Caenorhabditis elegans Hypothetical pr... 42 6e-04
AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin pr... 41 0.001
AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin pr... 41 0.001
U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arre... 36 0.021
D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C prot... 36 0.021
D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C prot... 36 0.021
Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical pr... 32 0.45
U28740-5|AAA68320.1| 229|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z74036-5|CAA98489.3| 171|Caenorhabditis elegans Hypothetical pr... 31 0.79
AY190131-1|AAO33925.1| 171|Caenorhabditis elegans CNB-1 protein. 31 0.79
L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical p... 30 1.8
Z73906-16|CAA98123.1| 722|Caenorhabditis elegans Hypothetical p... 29 3.2
Z72516-4|CAA96690.1| 722|Caenorhabditis elegans Hypothetical pr... 29 3.2
U29488-8|AAA68777.1| 320|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82096-9|CAB05035.1| 375|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z82096-8|CAB05034.1| 359|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81511-4|CAB04169.1| 375|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81511-3|CAB04168.1| 359|Caenorhabditis elegans Hypothetical pr... 27 9.8
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 27 9.8
M37119-1|AAA51610.1| 375|Caenorhabditis elegans cAMP-dependent ... 27 9.8
AJ011938-1|CAB41355.1| 44|Caenorhabditis elegans cyclic AMP-de... 27 9.8
>Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical
protein T07G12.1 protein.
Length = 182
Score = 48.0 bits (109), Expect = 6e-06
Identities = 34/122 (27%), Positives = 61/122 (50%)
Frame = -1
Query: 667 ASRKQGWHLIKVKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKT 488
A R G + + + N +++D D +G I EF ++ E+ + ++ AFK DK
Sbjct: 48 AMRMLGLNPTEEELLNMVNEYDVDGNGKIDFGEFCKMMKEMNKETDQELIRLAFKVFDKD 107
Query: 487 GXGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYS 308
G G IT + K + + R+ S EE +++I + + DG D ++ L+EF+N +
Sbjct: 108 GNGYITAQEFKHFMTTMGE-RF-SEEEVDEIIRE-----VDKDG--DEQIDLDEFVNMVA 158
Query: 307 GI 302
I
Sbjct: 159 PI 160
>Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical
protein F10G8.5 protein.
Length = 190
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = -1
Query: 607 FDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDD-IKGVYSVDSQ 431
FDTDNSG I EFL+ I S + +E AF+ D G G I + IK + ++
Sbjct: 74 FDTDNSGFIDFKEFLLAINVTSSGTPEQKLEWAFRMYDIDGNGTIDEKEMIKIIEAIYEM 133
Query: 430 TRYKSGEETEDVIMKRFLANFES-DGTVDGKVTLEEFMN 317
+ + +D KR FE D D ++TL+EF++
Sbjct: 134 LGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVD 172
>L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calcium
binding protein protein.
Length = 190
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = -1
Query: 607 FDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDD-IKGVYSVDSQ 431
FDTDNSG I EFL+ I S + +E AF+ D G G I + IK + ++
Sbjct: 74 FDTDNSGFIDFKEFLLAINVTSSGTPEQKLEWAFRMYDIDGNGTIDEKEMIKIIEAIYEM 133
Query: 430 TRYKSGEETEDVIMKRFLANFES-DGTVDGKVTLEEFMN 317
+ + +D KR FE D D ++TL+EF++
Sbjct: 134 LGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVD 172
>Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical
protein ZK673.7 protein.
Length = 160
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = -1
Query: 625 KNXSSQFDTDNSGSISLDEFL-----IKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDD 461
K +FD D SG I +EF + E + +AF+ DK G G I + D
Sbjct: 57 KQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSD 116
Query: 460 IKGVY-SVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSG 305
++ + ++D S EE +++I A ++DG+ G V +EFM SG
Sbjct: 117 LRDILRALDDNV---SEEELDEMI-----AEIDADGS--GTVDFDEFMEMMSG 159
>AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C
protein.
Length = 160
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = -1
Query: 625 KNXSSQFDTDNSGSISLDEFL-----IKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDD 461
K +FD D SG I +EF + E + +AF+ DK G G I + D
Sbjct: 57 KQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSD 116
Query: 460 IKGVY-SVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSG 305
++ + ++D S EE +++I A ++DG+ G V +EFM SG
Sbjct: 117 LRDILRALDDNV---SEEELDEMI-----AEIDADGS--GTVDFDEFMEMMSG 159
>U40427-2|AAA81468.2| 159|Caenorhabditis elegans Hypothetical
protein F43C9.2 protein.
Length = 159
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -1
Query: 610 QFDTDNSGSISLDEFLIKIR-PPMSESRRNIVEQAFKKLDKTGXGAITIDDI 458
+ DTD +G IS +EF+ ++ PP+ + +E F+K D G GAIT D++
Sbjct: 66 EMDTDKTGKISKEEFVNYMKSPPIHRTTLRELEVQFRKFDSDGDGAITEDEM 117
>AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin
protein.
Length = 149
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = -1
Query: 661 RKQGWHLIKVKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSES-RRNIVEQAFKKLDKTG 485
R G + + + ++ ++ D D +G+I EFL + M ++ + +AF+ DK G
Sbjct: 38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 484 XGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFM 320
G I+ +++ V + GE+ D + + + DG DG+V EEF+
Sbjct: 98 NGFISAAELRHVMT-------NLGEKLTDEEVDEMIREADIDG--DGQVNYEEFV 143
>AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin
protein 1 protein.
Length = 149
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = -1
Query: 661 RKQGWHLIKVKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSES-RRNIVEQAFKKLDKTG 485
R G + + + ++ ++ D D +G+I EFL + M ++ + +AF+ DK G
Sbjct: 38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 484 XGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFM 320
G I+ +++ V + GE+ D + + + DG DG+V EEF+
Sbjct: 98 NGFISAAELRHVMT-------NLGEKLTDEEVDEMIREADIDG--DGQVNYEEFV 143
>U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arrest
at two-fold protein10 protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.021
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Frame = -1
Query: 610 QFDTDNSGSISLDEFLIKIRPPMS----ESRRNIVEQAFKKLDKTGXGAITIDDIKGVYS 443
+FD D SG + DEF + + E+ + +AF+ DK G G I+ +K +
Sbjct: 62 KFDADGSGKLEFDEFCALVYTVANTVDKETLEKELREAFRLFDKEGNGYISRPTLKALLK 121
Query: 442 VDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGIS 299
+ ++ D ++ + + DG+ GK+ EEF +G S
Sbjct: 122 -------EIADDLTDQQLEEAVDEIDEDGS--GKIEFEEFWELMAGES 160
>D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.021
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Frame = -1
Query: 610 QFDTDNSGSISLDEFLIKIRPPMS----ESRRNIVEQAFKKLDKTGXGAITIDDIKGVYS 443
+FD D SG + DEF + + E+ + +AF+ DK G G I+ +K +
Sbjct: 62 KFDADGSGKLEFDEFCALVYTVANTVDKETLEKELREAFRLFDKEGNGYISRPTLKALLK 121
Query: 442 VDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGIS 299
+ ++ D ++ + + DG+ GK+ EEF +G S
Sbjct: 122 -------EIADDLTDQQLEEAVDEIDEDGS--GKIEFEEFWELMAGES 160
>D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.021
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Frame = -1
Query: 610 QFDTDNSGSISLDEFLIKIRPPMS----ESRRNIVEQAFKKLDKTGXGAITIDDIKGVYS 443
+FD D SG + DEF + + E+ + +AF+ DK G G I+ +K +
Sbjct: 62 KFDADGSGKLEFDEFCALVYTVANTVDKETLEKELREAFRLFDKEGNGYISRPTLKALLK 121
Query: 442 VDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGIS 299
+ ++ D ++ + + DG+ GK+ EEF +G S
Sbjct: 122 -------EIADDLTDQQLEEAVDEIDEDGS--GKIEFEEFWELMAGES 160
>Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical
protein E02A10.3 protein.
Length = 202
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -1
Query: 613 SQFDTDNSGSISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDD 461
+ FD D SG+I++DE I+ E R+ +++ ++D+ G I D+
Sbjct: 63 NMFDADRSGAIAIDELEAAIKNLGLEQTRDELDKIIDEVDQRGNHQIDFDE 113
>U28740-5|AAA68320.1| 229|Caenorhabditis elegans Hypothetical
protein B0563.7 protein.
Length = 229
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 652 GWHLIKVKPKNXSSQFDTDNSGSISLDEF---LIKIRPPMSESRRNIVEQAFKKLDKTGX 482
G H K + N + D D +G I +EF + K + + + ++ + F+ D+
Sbjct: 81 GLHANKAEIDNVIKEVDADGNGEIDFEEFCACMKKSQNIVKSTNEELIRECFEIFDQDRN 140
Query: 481 GAITIDDIK 455
G IT ++ K
Sbjct: 141 GIITENEFK 149
>Z74036-5|CAA98489.3| 171|Caenorhabditis elegans Hypothetical
protein F55C10.1 protein.
Length = 171
Score = 31.1 bits (67), Expect = 0.79
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = -1
Query: 610 QFDTDNSGSISLDEFLIKIRPPMSESRRN-IVEQAFKKLDKTGXGAITIDD-IKGV--YS 443
+ D D SGS+S++EF+ + E ++N +V++ D+ G G + + I+G+ +S
Sbjct: 29 KLDVDGSGSLSVEEFM-----SLPELQQNPLVQRVIDIFDEDGNGEVDFREFIQGISQFS 83
Query: 442 V--DSQTRYKSGEETEDVIMKRFLANFE 365
V D T+ K D+ F++N E
Sbjct: 84 VKGDKNTKLKFAFRIYDMDRDGFISNGE 111
>AY190131-1|AAO33925.1| 171|Caenorhabditis elegans CNB-1 protein.
Length = 171
Score = 31.1 bits (67), Expect = 0.79
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = -1
Query: 610 QFDTDNSGSISLDEFLIKIRPPMSESRRN-IVEQAFKKLDKTGXGAITIDD-IKGV--YS 443
+ D D SGS+S++EF+ + E ++N +V++ D+ G G + + I+G+ +S
Sbjct: 29 KLDVDGSGSLSVEEFM-----SLPELQQNPLVQRVIDIFDEDGNGEVDFREFIQGISQFS 83
Query: 442 V--DSQTRYKSGEETEDVIMKRFLANFE 365
V D T+ K D+ F++N E
Sbjct: 84 VKGDKNTKLKFAFRIYDMDRDGFISNGE 111
>L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical
protein F22B7.1 protein.
Length = 348
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -1
Query: 598 DNSGSISLDEFLIKIRPPMS-----ESRRNIVEQAFKKLDKTGXGAITIDDIKGVYSVDS 434
+N S LDE+L + RPP + + R +I E+A ++L G + +K Y
Sbjct: 257 ENRKSSELDEWLHRNRPPKALQAILDERSDIEEEALQRLRDNG----VLSSLKHYYKAVI 312
Query: 433 QTRYKSGEETEDV 395
++R S EE ED+
Sbjct: 313 ESR--SHEEQEDI 323
>Z73906-16|CAA98123.1| 722|Caenorhabditis elegans Hypothetical
protein T25G3.4 protein.
Length = 722
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = -1
Query: 517 EQAFKKLDKTGXGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKV 338
++ F++LDK G IT++D++ + +Q + ++ ++ L E D +G++
Sbjct: 630 KERFQQLDKDRKGHITVNDLRKHFREHNQ-------KIDERVLHELLN--EVDLNKNGEI 680
Query: 337 TLEEFMNYYSGI 302
+ EF YSG+
Sbjct: 681 EIAEFFQLYSGL 692
>Z72516-4|CAA96690.1| 722|Caenorhabditis elegans Hypothetical
protein T25G3.4 protein.
Length = 722
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = -1
Query: 517 EQAFKKLDKTGXGAITIDDIKGVYSVDSQTRYKSGEETEDVIMKRFLANFESDGTVDGKV 338
++ F++LDK G IT++D++ + +Q + ++ ++ L E D +G++
Sbjct: 630 KERFQQLDKDRKGHITVNDLRKHFREHNQ-------KIDERVLHELLN--EVDLNKNGEI 680
Query: 337 TLEEFMNYYSGI 302
+ EF YSG+
Sbjct: 681 EIAEFFQLYSGL 692
>U29488-8|AAA68777.1| 320|Caenorhabditis elegans Hypothetical
protein C56C10.9 protein.
Length = 320
Score = 27.9 bits (59), Expect = 7.4
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Frame = -1
Query: 625 KNXSSQFDTDNSGSISLDEFLIKIRPPMS-ESRRNIVEQAFKKLDKTGXGAITIDD-IKG 452
K ++ D G + E+ I + P S + IV DK ++ DD + G
Sbjct: 158 KRMFNRSDITRDGRLDRMEWHIFLHPEYSAQGLVEIVNDLMGVYDKNNDEVVSQDDFVNG 217
Query: 451 VYSVDSQTRYKSGEETEDVIMKRFLANF--ESDGTVDGKVTLEEFMNYYSGISVSIDNXC 278
+ + + E E + +R L F E D DGK T E +Y + + +
Sbjct: 218 IPGTVDELNPEF-ENMEKLEKERRLREFNEEIDENSDGKATFRELYDYVDPQNFRLASKE 276
Query: 277 YFDLMM 260
D+MM
Sbjct: 277 VNDIMM 282
>Z82096-9|CAB05035.1| 375|Caenorhabditis elegans Hypothetical
protein ZK909.2b protein.
Length = 375
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 634 VKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSESRRN 524
+KPK+ DN S SL EFL K R + N
Sbjct: 5 LKPKSSDEGSSKDNKNSASLKEFLDKAREDFKQRWEN 41
>Z82096-8|CAB05034.1| 359|Caenorhabditis elegans Hypothetical
protein ZK909.2a protein.
Length = 359
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 634 VKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSESRRN 524
+KPK+ DN S SL EFL K R + N
Sbjct: 5 LKPKSSDEGSSKDNKNSASLKEFLDKAREDFKQRWEN 41
>Z81511-4|CAB04169.1| 375|Caenorhabditis elegans Hypothetical
protein ZK909.2b protein.
Length = 375
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 634 VKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSESRRN 524
+KPK+ DN S SL EFL K R + N
Sbjct: 5 LKPKSSDEGSSKDNKNSASLKEFLDKAREDFKQRWEN 41
>Z81511-3|CAB04168.1| 359|Caenorhabditis elegans Hypothetical
protein ZK909.2a protein.
Length = 359
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 634 VKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSESRRN 524
+KPK+ DN S SL EFL K R + N
Sbjct: 5 LKPKSSDEGSSKDNKNSASLKEFLDKAREDFKQRWEN 41
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 586 SISLDEFLIKIRPPMSESRRNIVEQAFKKLDKTGXGAITIDDIK 455
+I++DE + +IR M+ +RRN K D+ AI ++ +K
Sbjct: 611 TINIDEVVREIRGLMAPTRRNFAISLSPKTDEIDYQAINLNRLK 654
>M37119-1|AAA51610.1| 375|Caenorhabditis elegans cAMP-dependent
protein kinase catalyticsubunit C protein.
Length = 375
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 634 VKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSESRRN 524
+KPK+ DN S SL EFL K R + N
Sbjct: 5 LKPKSSDEGSSKDNKNSASLKEFLDKAREDFKQRWEN 41
>AJ011938-1|CAB41355.1| 44|Caenorhabditis elegans cyclic
AMP-dependent protein kinasecatalytic subunit protein.
Length = 44
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 634 VKPKNXSSQFDTDNSGSISLDEFLIKIRPPMSESRRN 524
+KPK+ DN S SL EFL K R + N
Sbjct: 5 LKPKSSDEGSSKDNKNSASLKEFLDKAREDFKQRWEN 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,953
Number of Sequences: 27780
Number of extensions: 251814
Number of successful extensions: 693
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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