Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1181
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007306-1|AAP35970.1|  174|Homo sapiens eukaryotic translation ...    54   5e-07
BC005291-1|AAH05291.1|  174|Homo sapiens eukaryotic translation ...    54   5e-07
AL451187-1|CAI14747.1|  174|Homo sapiens eukaryotic translation ...    54   5e-07
AL355499-1|CAH72539.1|  174|Homo sapiens eukaryotic translation ...    54   5e-07
AL023694-1|CAI21644.1|  174|Homo sapiens eukaryotic translation ...    54   5e-07
AB011079-1|BAA24926.1|  174|Homo sapiens p18 component of aminoa...    54   5e-07

>BT007306-1|AAP35970.1|  174|Homo sapiens eukaryotic translation
           elongation factor 1 epsilon 1 protein.
          Length = 174

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -3

Query: 491 SSEEQRLLTYQWLEYX-SMFSNXAVANSTFAFKXLQEINRAXQSNXYXTGQFLTIADVAL 315
           S+ E++ +  QWLEY  +     +  N       L+++N   +   Y TG   T+AD+ L
Sbjct: 63  STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTL--LKDLNSYLEDKVYLTGYNFTLADILL 120

Query: 314 YYIVYPLLEHMXVAEXDAFVXLCRWSKHIQAQPRV 210
           YY ++  +  + V E + ++ + RW  HIQ  P +
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHYPGI 155


>BC005291-1|AAH05291.1|  174|Homo sapiens eukaryotic translation
           elongation factor 1 epsilon 1 protein.
          Length = 174

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -3

Query: 491 SSEEQRLLTYQWLEYX-SMFSNXAVANSTFAFKXLQEINRAXQSNXYXTGQFLTIADVAL 315
           S+ E++ +  QWLEY  +     +  N       L+++N   +   Y TG   T+AD+ L
Sbjct: 63  STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTL--LKDLNSYLEDKVYLTGYNFTLADILL 120

Query: 314 YYIVYPLLEHMXVAEXDAFVXLCRWSKHIQAQPRV 210
           YY ++  +  + V E + ++ + RW  HIQ  P +
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHYPGI 155


>AL451187-1|CAI14747.1|  174|Homo sapiens eukaryotic translation
           elongation factor 1 epsilon 1 protein.
          Length = 174

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -3

Query: 491 SSEEQRLLTYQWLEYX-SMFSNXAVANSTFAFKXLQEINRAXQSNXYXTGQFLTIADVAL 315
           S+ E++ +  QWLEY  +     +  N       L+++N   +   Y TG   T+AD+ L
Sbjct: 63  STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTL--LKDLNSYLEDKVYLTGYNFTLADILL 120

Query: 314 YYIVYPLLEHMXVAEXDAFVXLCRWSKHIQAQPRV 210
           YY ++  +  + V E + ++ + RW  HIQ  P +
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHYPGI 155


>AL355499-1|CAH72539.1|  174|Homo sapiens eukaryotic translation
           elongation factor 1 epsilon 1 protein.
          Length = 174

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -3

Query: 491 SSEEQRLLTYQWLEYX-SMFSNXAVANSTFAFKXLQEINRAXQSNXYXTGQFLTIADVAL 315
           S+ E++ +  QWLEY  +     +  N       L+++N   +   Y TG   T+AD+ L
Sbjct: 63  STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTL--LKDLNSYLEDKVYLTGYNFTLADILL 120

Query: 314 YYIVYPLLEHMXVAEXDAFVXLCRWSKHIQAQPRV 210
           YY ++  +  + V E + ++ + RW  HIQ  P +
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHYPGI 155


>AL023694-1|CAI21644.1|  174|Homo sapiens eukaryotic translation
           elongation factor 1 epsilon 1 protein.
          Length = 174

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -3

Query: 491 SSEEQRLLTYQWLEYX-SMFSNXAVANSTFAFKXLQEINRAXQSNXYXTGQFLTIADVAL 315
           S+ E++ +  QWLEY  +     +  N       L+++N   +   Y TG   T+AD+ L
Sbjct: 63  STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTL--LKDLNSYLEDKVYLTGYNFTLADILL 120

Query: 314 YYIVYPLLEHMXVAEXDAFVXLCRWSKHIQAQPRV 210
           YY ++  +  + V E + ++ + RW  HIQ  P +
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHYPGI 155


>AB011079-1|BAA24926.1|  174|Homo sapiens p18 component of
           aminoacyl-tRNA synthetase complex protein.
          Length = 174

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -3

Query: 491 SSEEQRLLTYQWLEYX-SMFSNXAVANSTFAFKXLQEINRAXQSNXYXTGQFLTIADVAL 315
           S+ E++ +  QWLEY  +     +  N       L+++N   +   Y TG   T+AD+ L
Sbjct: 63  STAEEKAIVQQWLEYRVTQVDGHSSKNDIHTL--LKDLNSYLEDKVYLTGYNFTLADILL 120

Query: 314 YYIVYPLLEHMXVAEXDAFVXLCRWSKHIQAQPRV 210
           YY ++  +  + V E + ++ + RW  HIQ  P +
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHYPGI 155


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,187,111
Number of Sequences: 237096
Number of extensions: 1403187
Number of successful extensions: 1905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)