Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1181
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81581-10|CAN86611.1|  309|Caenorhabditis elegans Hypothetical p...    31   0.79 
Z81581-9|CAN86610.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z81581-11|CAN86612.1|  168|Caenorhabditis elegans Hypothetical p...    31   1.0  
AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine re...    28   5.6  
AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine re...    28   5.6  
U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated io...    27   9.8  

>Z81581-10|CAN86611.1|  309|Caenorhabditis elegans Hypothetical
           protein T02E1.5b protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 21/80 (26%), Positives = 41/80 (51%)
 Frame = -3

Query: 635 KMIGKYLDVSVGAVCYNTDKVPXAVLENKNVEGFVTIILSMASKCGTASSEEQRLLTYQW 456
           +++ K + V+  A+ + T      +LE+   +G +  I SMA KCG A      L+ Y  
Sbjct: 140 ELMVKTVSVNTNALFFTTKNFLPGMLESN--KGHIVTIASMAGKCGVAG-----LVDYCA 192

Query: 455 LEYXSMFSNXAVANSTFAFK 396
            ++ ++  N ++A+  +A K
Sbjct: 193 SKHGAVGFNDSLASELYALK 212


>Z81581-9|CAN86610.1|  307|Caenorhabditis elegans Hypothetical
           protein T02E1.5a protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 21/80 (26%), Positives = 41/80 (51%)
 Frame = -3

Query: 635 KMIGKYLDVSVGAVCYNTDKVPXAVLENKNVEGFVTIILSMASKCGTASSEEQRLLTYQW 456
           +++ K + V+  A+ + T      +LE+   +G +  I SMA KCG A      L+ Y  
Sbjct: 138 ELMVKTVSVNTNALFFTTKNFLPGMLESN--KGHIVTIASMAGKCGVAG-----LVDYCA 190

Query: 455 LEYXSMFSNXAVANSTFAFK 396
            ++ ++  N ++A+  +A K
Sbjct: 191 SKHGAVGFNDSLASELYALK 210


>Z81581-11|CAN86612.1|  168|Caenorhabditis elegans Hypothetical
           protein T02E1.5c protein.
          Length = 168

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = -3

Query: 623 KYLDVSVGAVCYNTDKVPXAVLENKNVEGFVTIILSMASKCGTASSEEQRLLTYQWLEYX 444
           K + V+  A+ + T      +LE+   +G +  I SMA KCG A      L+ Y   ++ 
Sbjct: 3   KTVSVNTNALFFTTKNFLPGMLESN--KGHIVTIASMAGKCGVAG-----LVDYCASKHG 55

Query: 443 SMFSNXAVANSTFAFK 396
           ++  N ++A+  +A K
Sbjct: 56  AVGFNDSLASELYALK 71


>AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical
           protein Y53G8B.1 protein.
          Length = 213

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -3

Query: 401 FKXLQEINRAXQSNXYXTGQFLTIADVALYYIVYPLLEHMXVAEXDAFVXLCRWSKHIQA 222
           FK L+E+ +   S  +  G  ++IAD+ L  IVY  +E   V +   +  + R S  +  
Sbjct: 138 FKALEELLQM-HSGDFCVGNQISIADICLPSIVYNAIEKYHV-DMTPYPIITRISNKLAE 195

Query: 221 QP--RVCH--NXPPLPLN 180
            P  +V H  N P  P N
Sbjct: 196 LPEFQVAHPNNQPDAPKN 213


>AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform b protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 533 VTIILSMASKCGTASSEEQRLLTYQWLEYXS 441
           + +ILSM  +  T   EE +LLT+ W E  S
Sbjct: 64  IVVILSMLYRAITFLGEEGKLLTFNWSESNS 94


>AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform a protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 533 VTIILSMASKCGTASSEEQRLLTYQWLEYXS 441
           + +ILSM  +  T   EE +LLT+ W E  S
Sbjct: 64  IVVILSMLYRAITFLGEEGKLLTFNWSESNS 94


>U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated ion
           channel protein 3 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 24/106 (22%), Positives = 45/106 (42%)
 Frame = -3

Query: 554 NKNVEGFVTIILSMASKCGTASSEEQRLLTYQWLEYXSMFSNXAVANSTFAFKXLQEINR 375
           N+N++  V I+        +   EE R + + WL   S++    +  +T   K L E  R
Sbjct: 109 NQNMQVLVYIVQQWTDASLSWKVEEFRGIKHTWLPEHSIWIPDIIVFNTLEHKMLLEAVR 168

Query: 374 AXQSNXYXTGQFLTIADVALYYIVYPLLEHMXVAEXDAFVXLCRWS 237
           +     Y TG+ +T A  A+Y ++  +       +   +V    W+
Sbjct: 169 SPIKVSY-TGE-VTYAYPAIYTVLCQIGIATFPFDDQVYVQFASWA 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,884,634
Number of Sequences: 27780
Number of extensions: 255319
Number of successful extensions: 419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)