Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1180
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   132   5e-32
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    64   2e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    58   9e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    56   4e-09
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    42   1e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    38   0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    35   0.013
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    29   0.84 
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    27   1.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   5.9  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   7.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  132 bits (319), Expect = 5e-32
 Identities = 60/67 (89%), Positives = 64/67 (95%)
 Frame = -3

Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
           GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367

Query: 316 SIVHRKC 296
            IV+RKC
Sbjct: 368 GIVYRKC 374



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 22/34 (64%), Positives = 23/34 (67%)
 Frame = -2

Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT 588
           GQVITIGNERFR P A F    LG+E  GI E T
Sbjct: 245 GQVITIGNERFRAPEALFQPSALGLENAGIHEAT 278



 Score = 33.1 bits (72), Expect = 0.039
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 573 MKCDVDIRKDLYAN 532
           MKCDVDIRKDLY N
Sbjct: 283 MKCDVDIRKDLYGN 296


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
 Frame = -3

Query: 496 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLXTFQQMWISKQEYDE 326
           G + R+Q E++ L P + ++KI A     ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419

Query: 325 SGP---SIVHRKC 296
            G    +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 26/66 (39%), Positives = 41/66 (62%)
 Frame = -3

Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
           G  +R   E+ A++    ++KI A PER ++ W+GGSILASL TF+++ I+ +EY     
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEYKNDQN 372

Query: 316 SIVHRK 299
            I  R+
Sbjct: 373 VIFRRR 378


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
 Frame = -3

Query: 496 GIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLXTFQQMWISKQEYDES 323
           G+++R+Q E+  LA  S + +           +VW GGSILASL  FQ +W+SKQEYDE 
Sbjct: 358 GLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEV 417

Query: 322 G 320
           G
Sbjct: 418 G 418


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -3

Query: 442 KIKIIAPPERKYSVWIGGSILASLXT-FQQMWISKQEYDESG 320
           K+KI   P R+++V+IGG++LA +      MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378



 Score = 33.9 bits (74), Expect = 0.022
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXE 594
           G+VI +G+ER+ CP   F   ++G E  G+ E
Sbjct: 245 GRVIKVGSERYECPECLFQPHLVGSEQPGLSE 276


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 439 IKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHR 302
           + +I+   ++ +VW GGS+LA    F     +K +Y+E G SI  R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = -3

Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
           G+  R+++E+T++ P    I +          W G S  +    F+   ++++EY E GP
Sbjct: 649 GMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708

Query: 316 SIV 308
             +
Sbjct: 709 EYI 711


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 496 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLXTFQQMWISKQEYDE 326
           G A  +++ I +   +   I +I PP   + ++  W G  I   +    ++WI   ++  
Sbjct: 544 GFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKM 603

Query: 325 SGPSIVHRK 299
            G  ++  K
Sbjct: 604 LGSRVLQYK 612


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 222 NGDYKPELSSRPRAAGGSDARCVXKHFLCTMEGPDSSYSC 341
           NG Y  +++  P+ AG    +C   H L  ME   + +SC
Sbjct: 225 NGAYVEQMNQIPKLAG----KCTGDHMLINMEWGATDFSC 260


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 400 WIGGSILASLXTFQQM---WISKQEYDESGPSIVHRK 299
           ++GGSI+A     + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 434 LNLHCRWGESCDFLLHTVGDSRVHGWYHRTIRG 532
           L +HC   E   FL+H + +  + G+Y +T+ G
Sbjct: 315 LLIHCT-EEQTFFLMHKICEDYIPGYYSKTMYG 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,495
Number of Sequences: 5004
Number of extensions: 47710
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)