Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1180
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 141 5e-34
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 141 5e-34
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 141 5e-34
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 141 5e-34
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 141 5e-34
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 141 5e-34
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 141 5e-34
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 141 5e-34
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 141 5e-34
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 136 1e-32
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 135 3e-32
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 87 8e-18
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 73 3e-13
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 49 3e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol ... 31 0.59
U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol ... 31 0.59
U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol ... 31 0.59
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.1
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.1
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA... 27 9.6
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 369 SIVHRKC 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEAMFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 369 SIVHRKC 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEALFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 369 SIVHRKC 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEAMFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 369 SIVHRKC 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEALFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 369 SIVHRKC 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEALFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 369 SIVHRKC 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEAMFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 265 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 324
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 325 SIVHRKC 331
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 202 GQVITVGNERFRCPEALFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 259
Query: 512 TTHVP 498
TT P
Sbjct: 260 TTMYP 264
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 295 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 354
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 355 SIVHRKC 361
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 232 GQVITVGNERFRCPEALFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 289
Query: 512 TTHVP 498
TT P
Sbjct: 290 TTMYP 294
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 141 bits (341), Expect = 5e-34
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 368
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 369 SIVHRKC 375
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEALFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 136 bits (329), Expect = 1e-32
Identities = 64/67 (95%), Positives = 64/67 (95%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEI LAPSTMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 368 SIVHRKC 374
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/34 (67%), Positives = 24/34 (70%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT 588
GQVITIGNERFRCP F +GME GI ETT
Sbjct: 245 GQVITIGNERFRCPEVLFQPAFIGMEGAGIHETT 278
Score = 34.7 bits (76), Expect = 0.063
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -1
Query: 573 MKCDVDIRKDLYAN 532
MKCDVDIRKDLYAN
Sbjct: 283 MKCDVDIRKDLYAN 296
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 135 bits (326), Expect = 3e-32
Identities = 65/67 (97%), Positives = 65/67 (97%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
GIADRMQKEITALAP TMKIKIIAPPERKYSVWIGGSILASL TFQQMWISKQEYDESGP
Sbjct: 309 GIADRMQKEITALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 316 SIVHRKC 296
SIVHRKC
Sbjct: 368 SIVHRKC 374
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
GQVIT+GNERFRCP A F LGME+ GI ET+ + +R VLSGG
Sbjct: 246 GQVITVGNERFRCPEAMFQPSFLGMESAGIHETS--YNSIMKCDIDIRKDLYANTVLSGG 303
Query: 512 TTHVP 498
TT P
Sbjct: 304 TTMYP 308
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 87.4 bits (207), Expect = 8e-18
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLXTFQQMWISKQEYDE 326
G +R+ + P T+K+++ A P ERKY WIGGSIL SL TFQQMW+SK EYDE
Sbjct: 366 GFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDE 425
Query: 325 SGPSIVHRKC 296
SG SIV +KC
Sbjct: 426 SGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGP 317
G DR+ E+ +AP+ KI+I A ER WIGGSI+ASL TF++MW+ K+EY++ G
Sbjct: 307 GFGDRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGA 366
Query: 316 SIVHRK 299
S +H++
Sbjct: 367 SAMHKR 372
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -1
Query: 591 HIITPS-MKCDVDIRKDLYAN 532
H++ S MKCDVD+R+ LY+N
Sbjct: 275 HVVNQSIMKCDVDLRQTLYSN 295
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Frame = -3
Query: 442 KIKIIAPPERKYSVWIGGSILASL--XTFQQMWISKQEYDESG 320
KI+I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 341 KIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = -3
Query: 460 LAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSI 311
L P + +++I+ ++Y+VW GGS+LAS F Q+ +K EY E GPSI
Sbjct: 365 LKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/54 (31%), Positives = 35/54 (64%)
Frame = -3
Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQE 335
GIA+++++E++ + P+T+ ++ P R + ++G I+AS TF+ IS Q+
Sbjct: 486 GIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform b protein.
Length = 144
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 398 PYGVLPLWRSNDLNLHCRWGESCD 469
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform c protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 398 PYGVLPLWRSNDLNLHCRWGESCD 469
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform a protein.
Length = 536
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 398 PYGVLPLWRSNDLNLHCRWGESCD 469
P VLPL NDL+ +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 234 KPELSSRPRAAGGSDARCVXKHFLCTMEGPD 326
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 234 KPELSSRPRAAGGSDARCVXKHFLCTMEGPD 326
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 337 EYDESGPSIVHRKCX*THRASLPPAARGRLLNSG 236
+Y ++G SIV+ KC T R P R R LN G
Sbjct: 30 DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63
>Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical
protein W06D12.3 protein.
Length = 333
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = +2
Query: 470 FLLHTVGDSRVHGWYHRTIRGLAYKS--------LRMSTSHFMDGVIMWSRGCR 607
FLLHT+G V G HR AYK+ + +++ F + +I W+R R
Sbjct: 73 FLLHTLGSMGVTGGAHRLWAHRAYKATLSWRVFLMLINSIAFQNDIIDWARDHR 126
>AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA
fatty acid desaturaseFAT-5 protein.
Length = 333
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = +2
Query: 470 FLLHTVGDSRVHGWYHRTIRGLAYKS--------LRMSTSHFMDGVIMWSRGCR 607
FLLHT+G V G HR AYK+ + +++ F + +I W+R R
Sbjct: 73 FLLHTLGSMGVTGGAHRLWAHRAYKATLSWRVFLMLINSIAFQNDIIDWARDHR 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,689
Number of Sequences: 27780
Number of extensions: 283307
Number of successful extensions: 687
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -