Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1180
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             104   9e-25
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  104 bits (249), Expect = 9e-25
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = -3

Query: 496 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWIS 344
           GIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASL TFQQMWIS
Sbjct: 83  GIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 36/65 (55%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -2

Query: 689 GQVITIGNERFRCPXAXFPTFVLGMEACGIXETT**LHP*SATWTSVR-TCTPTPVLSGG 513
           GQVITIGNERFRCP A F    LGMEACGI ETT   +        +R       VLSGG
Sbjct: 20  GQVITIGNERFRCPEALFQPSFLGMEACGIHETT--YNSIMKCDVDIRKDLYANTVLSGG 77

Query: 512 TTHVP 498
           TT  P
Sbjct: 78  TTMYP 82


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 533 LAYKSLRMSTSHFMDGVIMWSRGC 604
           +A++   +  S FM+ +I W  GC
Sbjct: 106 MAFEMPMLVISSFMERMIGWEIGC 129


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 533 LAYKSLRMSTSHFMDGVIMWSRGC 604
           +A++   +  S FM+ +I W  GC
Sbjct: 106 MAFEMPMLVISSFMERMIGWEIGC 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,874
Number of Sequences: 438
Number of extensions: 3818
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)