Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1175
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   4.5  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   6.0  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   6.0  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -3

Query: 161 SATKPRTDRAFLSLLYFHIFVSRLFCVLVNLLIICS------VSCCRN 36
           S T+ R +R FLS+ YF     R+F +L+   +  S      + CC+N
Sbjct: 477 SDTQTRLNRLFLSIKYFSEKAMRVFILLLQRQVKYSELLNYYIECCKN 524


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 488 TQRMSQRPTGILWHLXSN 435
           T R+ Q PTG+LWH   N
Sbjct: 203 TVRVLQDPTGVLWHSFVN 220


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 531 VVWSKQLSRQCIKHLAIVYGGHYXSVRLD 617
           + WS  L+   +++LA+VY GH  + R D
Sbjct: 260 LAWSSPLAN--VEYLALVYPGHLFAFRYD 286


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 199 ALSQVTPGCCAGSPPQSLVLIARFSHYC 116
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,156
Number of Sequences: 5004
Number of extensions: 54568
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)