Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1175
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily ass...    31   1.0  
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    31   1.0  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    31   1.0  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    27   9.8  

>U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform d protein.
          Length = 799

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 611 PDTVVVTTVHDCQVFDTLPAELFGPHDVP-IDIIVTPTQVIETQRMSQRPTGI 456
           P    +T V D Q+ D   ++ F  HD P    ++TP Q+ + Q+  Q+P+ I
Sbjct: 441 PQVTSITNVRDSQLTDYDISD-FHAHDEPHYHTVLTPQQLQQNQQQHQQPSAI 492


>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 611 PDTVVVTTVHDCQVFDTLPAELFGPHDVP-IDIIVTPTQVIETQRMSQRPTGI 456
           P    +T V D Q+ D   ++ F  HD P    ++TP Q+ + Q+  Q+P+ I
Sbjct: 441 PQVTSITNVRDSQLTDYDISD-FHAHDEPHYHTVLTPQQLQQNQQQHQQPSAI 492


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 611 PDTVVVTTVHDCQVFDTLPAELFGPHDVP-IDIIVTPTQVIETQRMSQRPTGI 456
           P    +T V D Q+ D   ++ F  HD P    ++TP Q+ + Q+  Q+P+ I
Sbjct: 441 PQVTSITNVRDSQLTDYDISD-FHAHDEPHYHTVLTPQQLQQNQQQHQQPSAI 492


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 AAAXLAPDWRAHASRNQEPIRRITHFV 278
           AA+ +   WR H + N +P RR T+FV
Sbjct: 349 AASTIQCWWRYHLATNWKPPRRYTYFV 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,155
Number of Sequences: 27780
Number of extensions: 318277
Number of successful extensions: 972
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)