Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1173
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   2.3  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   2.3  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    26   5.4  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.2  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   7.2  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 219 FNSKSKLSAKKLVMLLRRPRFN 284
           FN KSKLS K+  +  RRPR N
Sbjct: 139 FNVKSKLSNKESFIKTRRPRTN 160


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 411 QQYLDVGDRLTVRKNYAEDRFQLWDELY 328
           + + D  +++    N  EDRFQLW E Y
Sbjct: 49  EAFSDEENKIVHLNNLKEDRFQLWFEKY 76


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 516 LVNDVGXGGCP---SVWWGTGTTX*VRXWCRRGEXLXLVSRC 632
           + ND G   C    S+  G G T     WC  GE L + SRC
Sbjct: 236 IYNDCGRRPCQLEFSIERGNGVTH--LQWCEDGEKLYVGSRC 275


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 298  VLILKLNLGRLNNITNFFAESFDFELKLRRLNNILI 191
            +LIL + L RL N  NFF + F      +   N LI
Sbjct: 1224 LLILTVKLIRLQNHKNFFMKLFQLTPTSKSFQNFLI 1259


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 420 PAKQQYLDVGDRLTVRKNYAEDRFQLW 340
           P+  +  D GD+   +K++ +D F LW
Sbjct: 884 PSDTENQDDGDKQKAKKDFVQDGFFLW 910


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 250 FFAESFDFELKLRRLNNILITSFLY*INLCYR 155
           FFA+ F  EL+ R L ++L ++F+Y   +C R
Sbjct: 42  FFAKGFPDELQHRSLFSVLRSAFVY--EICSR 71


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 155 YFNTRKSILSVDMNDTYLLLESVEGL 78
           Y NTRK ILS + N  YL  + + G+
Sbjct: 395 YVNTRKMILSSEGNPYYLKGKVISGI 420


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 234 KLSAKKLVMLLRRPRFNFKIKTFRKEINIVWDI 332
           K  AKKLV+  R  R  +     R+  +++WD+
Sbjct: 491 KCRAKKLVVESRNGRREYVQDAVRRHGDVIWDV 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,549
Number of Sequences: 5004
Number of extensions: 39450
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)