Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1173
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981           30   1.4  
02_01_0353 + 2545982-2549833                                           30   1.4  
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671     30   1.8  
05_01_0510 - 4253902-4254032,4254121-4255225                           29   3.2  
01_01_0084 - 636835-637965                                             28   5.6  
04_03_1030 + 21838282-21838593                                         28   7.4  

>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
          Length = 1158

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 393 PRPGTAAWRGRTPATGPRSPGVSPAXVWIA 482
           P PG  A    TPA G  +PG +P+  W A
Sbjct: 233 PTPGRMADADATPAAGGITPGATPSGAWDA 262


>02_01_0353 + 2545982-2549833
          Length = 1283

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 393 PRPGTAAWRGRTPATGPRSPGVSPAXVWIA 482
           P PG  A    TPA G  +PG +P+  W A
Sbjct: 257 PTPGRMADADATPAAGGITPGATPSGAWDA 286


>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
          Length = 340

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 502 GTXSXDTAIQTXAGDTPGDRGPVAGVRPRQAAVPGRGRQTHCPQK 368
           GT   D  +   AGD  G  G V  V+ +Q + P R R+   PQ+
Sbjct: 148 GTEITDANVSESAGDGGGGGGGVETVKAQQPSEPKRRRKQQPPQQ 192


>05_01_0510 - 4253902-4254032,4254121-4255225
          Length = 411

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = +3

Query: 399 PGTAAWRGRTPATGPRSPGVSPAXVWIAVSXEXVP-XGSHLVNDVGXGG---CPSV 554
           PG  A    TP T   SP  SPA    A +    P    H VN  G G    CP++
Sbjct: 46  PGGGAASSPTPTTARSSPKPSPASSTAARTNHAAPKLARHFVNVTGRGRPLICPTI 101


>01_01_0084 - 636835-637965
          Length = 376

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 472 FGSP--CLXXLYXMAVISSTTWXSGAVRLFGGELVRLXEYV 588
           F SP  CL  L+    + S  + +    L GGE+VRL +Y+
Sbjct: 243 FTSPEVCLHYLFASENVDSVVFGAAVSELDGGEVVRLMKYL 283


>04_03_1030 + 21838282-21838593
          Length = 103

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +3

Query: 402 GTAAWRGRTPATGP---RSPGVSPA 467
           G+ AW GR+PAT P    S G +PA
Sbjct: 13  GSTAWTGRSPATRPGATESTGCNPA 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,546
Number of Sequences: 37544
Number of extensions: 267752
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)