Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1173
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    33   0.23 
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    33   0.23 
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    29   3.8  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    29   3.8  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    29   3.8  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    29   3.8  

>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 435 WPEYD-PAKQQYLDVGDRLTVRKNYAEDRFQLWDELYP 325
           WP++D P ++ YL++ DR  V+  Y   +   W+   P
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNYYRNAQVGFWNNFIP 597


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 435 WPEYD-PAKQQYLDVGDRLTVRKNYAEDRFQLWDELYP 325
           WP++D P ++ YL++ DR  V+  Y   +   W+   P
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNYYRNAQVGFWNNFIP 597


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 435 WPEYD-PAKQQYLDVGDRLTVRKNYAEDRFQLWDELYP 325
           WP++D P ++ YL++ DR  V+  Y   +   W+   P
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNYYRNAQVGFWNNFIP 597


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 435 WPEYD-PAKQQYLDVGDRLTVRKNYAEDRFQLWDELYP 325
           WP++D P ++ YL++ DR  V+  Y   +   W+   P
Sbjct: 560 WPQFDQPNREAYLEITDRPRVKNYYRNAQVGFWNNFIP 597


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = +2

Query: 383 SLSPTSRYCCLAGSYSGHRTPISGGVARXCLDRRVXRXCT 502
           S S T  YCC +G  S   TPI G  A  C   R  R  T
Sbjct: 187 SPSSTPSYCCTSGPISPAYTPI-GNNANACAPTRSRRTST 225


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = +2

Query: 383 SLSPTSRYCCLAGSYSGHRTPISGGVARXCLDRRVXRXCT 502
           S S T  YCC +G  S   TPI G  A  C   R  R  T
Sbjct: 204 SPSSTPSYCCTSGPISPAYTPI-GNNANACAPTRSRRTST 242


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = +2

Query: 383 SLSPTSRYCCLAGSYSGHRTPISGGVARXCLDRRVXRXCT 502
           S S T  YCC +G  S   TPI G  A  C   R  R  T
Sbjct: 204 SPSSTPSYCCTSGPISPAYTPI-GNNANACAPTRSRRTST 242


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = +2

Query: 383 SLSPTSRYCCLAGSYSGHRTPISGGVARXCLDRRVXRXCT 502
           S S T  YCC +G  S   TPI G  A  C   R  R  T
Sbjct: 187 SPSSTPSYCCTSGPISPAYTPI-GNNANACAPTRSRRTST 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,686,207
Number of Sequences: 27780
Number of extensions: 237337
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)