Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1173
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.63 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.63 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.84 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.84 

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 197 FNNVLFVLNKPLLSYFNTRKSILSVDMNDTYLLLESVEGLHYMP----CX*LCYPN 42
           F N+L  +N   +    T+K ++ VD ++ Y  L     + Y+P       LCYP+
Sbjct: 263 FENILSHINTVYV--LRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFLCYPS 316


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 197 FNNVLFVLNKPLLSYFNTRKSILSVDMNDTYLLLESVEGLHYMP----CX*LCYPN 42
           F N+L  +N   +    T+K ++ VD ++ Y  L     + Y+P       LCYP+
Sbjct: 263 FENILSHINTVYV--LRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFLCYPS 316


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 188 VLFVLNKPLLSYFNTRKSILSVDMNDTYLLLESVEGLH 75
           V+F +   L S+  TR  +     + TY++ ES+ G H
Sbjct: 17  VIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRH 54


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 188 VLFVLNKPLLSYFNTRKSILSVDMNDTYLLLESVEGLH 75
           V+F +   L S+  TR  +     + TY++ ES+ G H
Sbjct: 17  VIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRH 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,721
Number of Sequences: 438
Number of extensions: 3037
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)