Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1172
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    26   5.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.2  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.5  

>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 403 KINLKQKESVRRGTHQRKNK 344
           +INL+Q+ +  RG+ +RKN+
Sbjct: 49  RINLEQRLATERGSEERKNR 68


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -2

Query: 436  KSINKRXKLLYKINLKQKESVRRGT 362
            +++ K+ KLL K+NL+Q++ + R +
Sbjct: 1741 ETVKKQEKLLKKLNLRQEQLIPRSS 1765


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 286 SRLPRIIQDQNKPNRSSHSQV 224
           +R+ RII+ QNK +RSS  Q+
Sbjct: 546 ARIYRIIKSQNKMSRSSKLQI 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,030
Number of Sequences: 5004
Number of extensions: 46960
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)