Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1171
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    35   0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    35   0.010
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    34   0.022
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    34   0.022
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    33   0.052
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    30   0.37 
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    30   0.37 
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    29   0.48 
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    29   0.85 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    29   0.85 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    28   1.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   2.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   6.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.0  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    26   6.0  

>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -3

Query: 683 KKXDXEREFDKYGKLNSVWVALNPPG----FAFIEFENLQXAEDACSAMNGTEMLGASXK 516
           K    E  F K+GK+  + +     G    FAF+  ++ + AE+A +++NGTE+ G    
Sbjct: 120 KPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIA 179

Query: 515 VE 510
           V+
Sbjct: 180 VD 181


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 644 KLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVE 510
           K N    + +P  FAFI FEN   A++A +++NG+   G + KVE
Sbjct: 55  KKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 692 REIKKXDXEREFDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
           +E+++   E   +KYGK+  + V  N  G  F++FEN   AE A + ++     G + K 
Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKA 586

Query: 512 EI 507
            I
Sbjct: 587 SI 588



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
           GF +I++ N   A +A   MNG ++ G + +V
Sbjct: 381 GFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -3

Query: 695 SREIKKXDXEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQXAEDACSAMNGTEML 531
           S + K+ D EREF +YG +  + V  N       G+AF+ FE  +  + A  A  G  + 
Sbjct: 108 SYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLN 167

Query: 530 GASXKVEI 507
           G    V++
Sbjct: 168 GRRIVVDV 175


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -3

Query: 689 EIKKXDXEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQXAEDACSAMNGTEMLG 528
           E  K D +     YG+L SV V      +  GFAF EF   + A +A  A+  T +LG
Sbjct: 731 EATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLG 788



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
           GF F+EF++   A  A  AMNG  + G   ++++S
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 659 FDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNG 543
           F  YGKL SV   +N P  A + F +L+ A  A + M+G
Sbjct: 183 FRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 668 EREFDKYGKLNSVWV--ALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
           E  F  YGK+  V     L   G AF+ F+NL+ A  A   + G  + G    ++ S
Sbjct: 47  EHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYS 103


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 659 FDKYGKLNSVWVA--LNPPGFAFIEFENLQXAEDACSAMNG 543
           F +YG +  + +   +   G AF+ +EN+Q A  AC  ++G
Sbjct: 32  FGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 248 LVLS*SEAFQVLKFNEYWGFIARHFDGSRKWSSLGLGDTRF-KIIGIYFK 102
           L+LS   AF  L    YW F + HF   R  S++ L    F KI+GI  K
Sbjct: 119 LMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAIQLKKFIFVKILGIVSK 168


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKVE 510
           GF F+E E+ + A D  +   G E +G+   VE
Sbjct: 38  GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
           GF F EF + Q  E AC  +N  ++ G   +V
Sbjct: 53  GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLG 528
           GF F EF+N   AE A S ++G +  G
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYG 378


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 191 FIARHFDGSRKWSSLGLG 138
           +IA + + SR WSSLGLG
Sbjct: 620 YIAMYSETSRNWSSLGLG 637


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 659 FDKYGKLNSVWVALNPPGFAFIEFENLQXAEDACSAMNGTEMLGASXKVEIS 504
           F  YG ++S+ + L+    AF+ F++++ A+     +NG  +   S  V IS
Sbjct: 607 FSAYGTVSSIRM-LSHKHSAFLNFDSVETAKHVLEELNGKRIFFGSDPVCIS 657


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 608 GFAFIEFENLQXAEDACSAMNGTEMLGASXKV 513
           G+A++ F N++  E A   +N T + G   ++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 605 FAFIEFENLQXAEDACSAMNGTEM 534
           FAF+E+E+ + AEDA   ++G  +
Sbjct: 49  FAFVEYEDSRDAEDAYYEVHGRRL 72


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 620 LNPPGFAFIEFENLQXAEDACSAMNG 543
           L P G AF+ F N +  + A   +NG
Sbjct: 86  LVPSGIAFVTFNNQEDVDKAIETLNG 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,465
Number of Sequences: 5004
Number of extensions: 32342
Number of successful extensions: 95
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)